KEGG   Phaeodactylum tricornutum: PHATRDRAFT_51026
Entry
PHATRDRAFT_51026  CDS       T01075                                 
Name
(RefSeq) histone deacetylase 1 isoform
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03082  ATP-dependent chromatin remodeling
pti03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    PHATRDRAFT_51026
   03083 Polycomb repressive complex
    PHATRDRAFT_51026
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:pti03036]
    PHATRDRAFT_51026
Enzymes [BR:pti01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     PHATRDRAFT_51026
Chromosome and associated proteins [BR:pti03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     PHATRDRAFT_51026
   HDAC complexes
    Sin3A-HDAC complex
     PHATRDRAFT_51026
    BRAF-HDAC complex
     PHATRDRAFT_51026
    REST complex
     PHATRDRAFT_51026
    SHIP complex
     PHATRDRAFT_51026
    MiDAC complex
     PHATRDRAFT_51026
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     PHATRDRAFT_51026
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    PHATRDRAFT_51026
  Chromatin remodeling factors
   NuRD complex
    PHATRDRAFT_51026
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 7202110
NCBI-ProteinID: XP_002181323
JGI: 51026
UniProt: B7G263
LinkDB
Position
12:complement(<195087..196681)
AA seq 426 aa
MGDSRRVSYFYDAEIGNYHYGQGHPMKPHRVRMTHNLVVNYGLYRKMEVFRPRLVSPTAM
TRFHSDDYINFLRVITPDNMQDYIRPLQRFNVGEDCPVFDGLFEFCQLYTSGSIGGAARL
NENRVDIVINWAGGLHHAKKAEASGFCYVNDCVLAILELLKKHERVLYIDIDIHHGDGVE
EAFYSTNRVMTVSFHKFGEYFPGTGDVLDVGYAQGKNYAINFPLNDGMDDDSYESIFRPV
IGKIMEVFAPGAVVLQCGADSLSGDRLGCFNLSAQGHANCVEFVRSFNIPMLVLGGGGYT
LRNVPRCWTYETSVLTGEKVSDELPFNDYFEYFGPDYRLHLPVSNMENLNSRAYLDKTKN
QLLDILSQVEPVPSVQIQTGQIDSQTNPRSMAMEVDDEPPAEESNPDARVTREDTGRKEH
ASELAA
NT seq 1281 nt   +upstreamnt  +downstreamnt
atgggggactctaggcgtgtatcgtacttttacgatgccgagatcggaaactaccattac
ggccaaggccatccgatgaagcctcatcgcgtgcgcatgacgcacaatctcgtcgtcaac
tacggcctctaccgcaagatggaggtctttcgtcctcgtcttgtttcgcccaccgccatg
acgcgttttcacagcgacgactacatcaacttcctccgagtcattacccccgacaatatg
caggattacattcgtcccctccagcgcttcaacgtgggagaagactgcccggtcttcgac
ggtttgttcgagttttgtcagctctacacatccggatcgattggcggcgccgctcggctt
aacgaaaatcgcgtcgatattgttatcaactgggctggcggtctgcatcacgctaaaaag
gccgaagcctccggattctgttacgtcaatgactgtgtcttggccattctcgagcttctc
aagaaacacgaacgagttctatatatcgacattgatattcatcacggagatggagtcgaa
gaagccttttactcgaccaaccgcgtcatgacggtcagttttcacaagtttggcgagtac
tttccaggaaccggggacgtcctcgatgtgggctacgcccagggcaagaactacgccatt
aacttcccgctcaacgacggtatggatgacgattcgtacgaatccatctttcgtccagtg
attggcaagatcatggaagtattcgcaccgggcgctgttgtcttgcaatgcggcgccgat
tcgttatcgggcgatcgtctcggctgctttaatctttcggcacagggccacgctaactgt
gttgagtttgtccgctccttcaatattccaatgctggtgctaggaggcggtggttatacg
ctacgcaatgtaccgcgctgctggacgtacgaaacgtcagtccttacgggagaaaaagtt
tcggacgaattaccctttaacgattatttcgagtactttggaccggattatcggctccat
ttgcccgtctcgaacatggaaaatcttaactcgcgagcctatttggataaaaccaagaat
cagcttttggatatactgagtcaagttgagcccgtgcccagcgtacaaatccaaaccgga
cagatagattcacagaccaaccctcgctctatggcgatggaagtggacgacgagcctcca
gcggaggaatcaaatccggatgcgcgcgtaacgagggaagacactgggcgaaaggaacac
gcgtccgagctggcggcgtaa

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