KEGG   Phaeodactylum tricornutum: PHATRDRAFT_51301
Entry
PHATRDRAFT_51301  CDS       T01075                                 
Symbol
helicase_5
Name
(RefSeq) hypothetical protein
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03013  Nucleocytoplasmic transport
pti03015  mRNA surveillance pathway
pti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHATRDRAFT_51301 (helicase_5)
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHATRDRAFT_51301 (helicase_5)
   03015 mRNA surveillance pathway
    PHATRDRAFT_51301 (helicase_5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_51301 (helicase_5)
   03041 Spliceosome [BR:pti03041]
    PHATRDRAFT_51301 (helicase_5)
Enzymes [BR:pti01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     PHATRDRAFT_51301 (helicase_5)
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     PHATRDRAFT_51301 (helicase_5)
Spliceosome [BR:pti03041]
 Complex C
  Other components
   EJC/TREX
    PHATRDRAFT_51301 (helicase_5)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    PHATRDRAFT_51301 (helicase_5)
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 CMS1 ResT-TelK_cat
Other DBs
NCBI-GeneID: 7199418
NCBI-ProteinID: XP_002185552
JGI: 51301
UniProt: B7GEM2
LinkDB
Position
32:18444..20749
AA seq 428 aa
MADNDDDLVDYDEEEVVPEVAKDAAAVGGDGKESKKGHYVGIHASGFKDFLLKPELLRAI
VDAGFEHPSEVQHESIPQAVLGGDIVCQAKSGMGKTAVFVLATLHQLNPSAESEDVQVLV
LCHTRELAFQIAHEYERFSKYLPSIKTAVFYGGVNVTQNRDILKKEHPHIVVGTPGRILK
LARDKDLKLSSLKHFVLDECDRVLESLDMRRDVQEIFRMTPHEKQVLLFSATLSKEIRPV
CKKFCQDPMEIYVDDETKLTLHGLQLYYAKLAEAEKNKKLNDLLDALEFNQVVIFVSKVA
RAKELNRLLTECNFPSICIHAGMRQEERISKYKSFKDFNARILVATDLFGRGIDIERVNV
VINYDFPDDSDQFLHRVGRAGRFGTKGIAISFISSEADQTILSQIQSRFEVNIPTLPDEI
DMSTYMST
NT seq 1287 nt   +upstreamnt  +downstreamnt
atggcggacaatgatgacgatctcgttgactacgatgaagaagaggtcgtacccgaagtc
gccaaagatgccgctgcagtgggaggcgacggcaaagaaagtaaaaagggtcactacgta
ggaattcacgcctccggctttaaggatttcctactcaaacccgaattgcttcgcgccatt
gtggacgctggtttcgagcatccctcggaagtgcagcacgagagtattccccaagctgta
ctaggcggagatattgtttgtcaggcaaagtcgggaatgggaaagacggcagtctttgtg
ctcgcaactctgcatcagttgaatccgtccgccgaatcggaagacgtccaagtccttgtg
ctctgtcacacgcgtgaactcgcattccagatcgcccacgagtacgaacgcttttcaaag
tacctcccatccatcaagactgctgttttctacggtggcgtcaatgtgactcagaatcgc
gacattctgaaaaaggaacatccgcacattgtcgttggaactccggggcgtattctcaaa
ttggctcgtgacaaggatctgaagctttcttctctcaagcattttgtactcgacgaatgc
gaccgcgttctcgagtcactagatatgcgccgggacgtccaagagatcttccgcatgacg
ccacacgaaaaacaggtcttgttgttcagcgctaccttgtccaaggaaatccgtccggtt
tgcaaaaagttttgccaggacccgatggagatctacgttgatgacgaaaccaaactgacc
ctgcacggattgcagctttattacgcaaaactggccgaggcagaaaagaacaagaaactc
aacgatctgttggatgccttggagtttaaccaggttgtcatcttcgtctccaaagtcgcc
cgtgcgaaagagttgaatcgtctcttaacggaatgcaactttccttccatctgcatccac
gccggtatgcggcaagaggaacgcatcagcaaatataaatcctttaaagatttcaacgcc
cgtattcttgtcgcgactgatctgtttggtcggggtattgatattgaacgcgtcaacgtg
gtcatcaattacgactttccggatgattccgatcagttcttacaccgtgtgggccgcgcg
ggacgttttggtaccaaagggattgccatttccttcattagctccgaagcggatcaaacc
atcctttcgcagattcagtcgcggtttgaagttaacattcccacgttgccggatgaaatt
gatatgagtacttacatgagcacctaa

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