Phaeodactylum tricornutum: PHATRDRAFT_52607
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Entry
PHATRDRAFT_52607 CDS
T01075
Symbol
SMC3
Name
(RefSeq) hypothetical protein
KO
K06669
structural maintenance of chromosome 3 (chondroitin sulfate proteoglycan 6)
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
pti03036
]
PHATRDRAFT_52607 (SMC3)
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
pti00535
]
PHATRDRAFT_52607 (SMC3)
Chromosome and associated proteins [BR:
pti03036
]
Eukaryotic type
Sister chromatid cohesion proteins
Cohesin complex
PHATRDRAFT_52607 (SMC3)
Meiosis-specific proteins
Cohesin complex and associated proteins
PHATRDRAFT_52607 (SMC3)
Proteoglycans [BR:
pti00535
]
Extracellular matrix (ECM) proteoglycans
Basement membrane proteoglycans
PHATRDRAFT_52607 (SMC3)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SMC_N
SMC_hinge
AAA_21
AAA_23
AAA_15
AAA_29
Sec3_CC
Motif
Other DBs
NCBI-GeneID:
7198409
NCBI-ProteinID:
XP_002184568
JGI:
52607
UniProt:
B7GBQ1
LinkDB
All DBs
Position
24:complement(<88863..>92808)
Genome browser
AA seq
1232 aa
AA seq
DB search
MHIKQITISNFRSFRQQPEIEAFSTHTNCVVGRNGSGKSNLLDAVQFVLLAPRFANLRQE
ERQALLHEGSGSAAVNAFVEIVFDNADHRFALEHSDEVVLRRTVGLKKDEFFLQRKRVTK
QEVQSLLEGAGFSRSNPYYIVQQGKVQDLCTMSDVERLRLLKEVAGTVVYDQKKTESLAK
MQENGHSITKIQEILDDIEAKLDELQAEKEELTAYQALDRQRRALQYVLYDKQLRKARHD
LDQLEHARTSHVQNLSALHEELKDTHEAIRNKDAVLKTKTNALRRNQTTLEAHEQDKTSR
VTAVTRLQLECQELLEAVRSGAEQLQSNEKELEAVQAEIEASQTNLRDTVQPAYDQAVAV
LQDLTTRRDEASRQVESLYAKQGRGQHFQTVQDRDAFLQSSVEELLATQRDKTSAVQAQQ
DTLANLRRSVTQETTEIDKLTSQLTSQAAGLQSLSKTIEETKRQRLELHDARKEAWREAE
ALHDQVREARGTFQRAKQDTAKVMPRATAMGLKALTSVVEQEGLTSDQYFGMLMDNFVLR
DDKYQTAVEVAAQNALFHVVVDTDVTASRLMKRLEADKLGRVTFLPLNQLRIDQPNLPQS
NDIRPMLDLCLQYDRKVERALQHVFGKKLLARTPEIASEWSAQHGVDAITLDGDLCSRKG
ALTGGYVDTSKSRLRAHAKQTEAQAALQNVETLHQGKSREAEQVEQQVTNLMQELQRQES
KQAELSRMVQGKEMELDRIQARLENHKKQVEMVEKTLIPPLERDIVALNGDMDRLKAEMG
TPLTQTLSDEDRKLLATLKETQTRLVAEIESQSDKVAQVGLDRQKLQSLLDDNLLKRQRE
LREGGVDGRRRQSHGRLSSAAVQAEQQEELAECQRRLDDALRVKDEIEGRLEESRRVDEE
LRGEIIVVKNELEQLKSEYLNVSKRLEEAQNETERLMNKRSMCISTREEKMRSIRELGSL
PPPAELDKHSGKSTEALKNSIEGVNKKLKKYSHINNKAFDQYINFSEQRESLLVRKAELD
QGAEKVEELVSSLDQQKDEAINRTFRGVSAHFKDVFEELVPNGAGELILRTAMDEAMEDD
ANDTDQDDDSVNADSPKKAKGFDANNPDVNLYRGIGIQVRFSAVGENYLMSQLSGGQKAL
VSLALIFAIQRCDPAPFYILDELDQALDASYRAAVANLIQKQATSTENPTQFIVSTFRPE
LVAIANRCYGISLQNKVSRIHPLSKKDALHFI
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgcacattaaacaaatcaccattagcaatttccggtcgtttcgacaacagccggaaatc
gaagccttttcaacgcacaccaattgcgtggtgggacgtaacgggtccggcaagtccaat
ctcctggatgccgtgcagttcgtcttgttggctccgcgattcgctaatctccgtcaggaa
gaacggcaggccttgctgcacgaaggatccggcagtgcggccgtcaacgcgttcgtcgag
attgtctttgacaatgccgatcaccggttcgccttggagcattcggacgaagtcgtcctg
cgacggaccgtgggactcaagaaggacgagttctttctccagcgaaagcgggtgaccaaa
caagaagtacagagtttgttggaaggcgccggcttctcccgctccaacccctattacatc
gtgcagcaggggaaagtacaagatctgtgtaccatgagcgacgtggagcgcctccgactc
ttgaaggaagtcgccgggaccgtcgtctacgatcagaaaaaaacggaaagcctcgccaaa
atgcaggaaaacggacacagcattaccaaaatacaggaaatactcgacgacattgaagcc
aagctcgacgaattgcaggcggaaaaggaagaactcaccgcctaccaagccttggaccgg
caacgccgggcccttcagtacgtcctctacgacaaacaactccggaaagcccggcacgat
ctcgatcagttggaacacgcacggacatcccacgtacaaaacctcagcgcactacacgaa
gaattgaaagacacgcacgaggccattcgcaacaaggacgccgtgctcaaaacaaaaact
aacgcgctccggcgcaaccagaccaccctcgaagcccacgagcaggacaagaccagccgg
gttacggccgtcacgagactccaactcgaatgtcaggagcttctggaagctgtgcggagt
ggcgcggaacagctacagtccaacgaaaaggagctcgaggccgtccaggccgaaattgag
gcctcccaaacgaacctgcgggatactgtccagcccgcctacgatcaagccgtggctgtc
ttgcaagacttgaccactcgtcgggacgaagcatcccgtcaggtcgaatcactctacgcc
aaacaaggtcggggacagcactttcaaacagtacaagatcgagacgcctttttgcaaagc
tccgtagaggaactcttggcgacacagcgcgataaaaccagtgccgtacaggcgcaacaa
gacacactggccaacttgcgccgttccgttacgcaagaaacgacggagattgacaagctt
acctcgcaactcaccagccaagctgccgggttgcagtctttatccaaaaccattgaagaa
accaagcgccaacgcttggaactacacgatgcgcgcaaggaagcttggcgggaggccgaa
gcccttcacgatcaagttcgggaagccaggggaacttttcaacgggccaaacaagacacc
gccaaggtcatgcctcgcgcaaccgcaatgggactcaaggcgctaacgagtgtggtcgaa
caggaaggactcacctcggatcagtatttcggcatgctcatggacaatttcgttctgcga
gacgacaagtatcaaacggccgtcgaagtagcggcgcagaatgcgctctttcacgtcgtt
gtggacaccgacgttacggcgtcccggctcatgaagcgcttggaggccgacaagctcggt
cgcgtaacctttctaccgctcaaccagctccgtatcgatcagcccaatttgccccaatct
aacgatattcgtcccatgctcgatttatgtctccagtacgaccgaaaggtcgaacgtgcc
ttgcaacacgtctttggcaaaaaactcctggctcgaacaccagaaatagcatcggaatgg
agtgctcagcacggcgtcgacgcaatcaccttggacggcgacttgtgcagtcgcaagggc
gccttgacgggcggttacgtggacacgtccaagtctcggctccgtgcgcacgccaaacaa
accgaagcccaagcggccttgcaaaacgtggagacgctccatcaaggcaaaagtcgtgaa
gccgagcaagtggagcagcaagtaacgaatcttatgcaggagctgcagcgacaggaaagc
aaacaggcggagctcagtcggatggtccaaggtaaggaaatggaacttgatcgaatacag
gctcgattagaaaatcacaaaaagcaggtggaaatggtcgaaaagacgctaattccacct
ttggaacgggacattgttgccttgaacggggacatggatcgtctcaaggccgaaatgggg
acccccttgacgcagacgctctccgatgaggaccgcaagctgttggccacgctcaaagaa
acgcaaacacggcttgttgccgagattgaatcccagagtgataaggttgctcaagttggt
ttggaccgccaaaagctccagagtctactcgacgataatctgctgaaacgtcaacgcgag
ctaagggaaggtggcgtcgacgggcgtcggcgtcagagccatggtcgtctttcgtcagcc
gcggtgcaagcggagcagcaagaagaattggccgaatgccagcgccgattggacgatgcc
ctgcgcgtcaaagacgaaattgaggggcgtttggaagagtcacgtcgggtggacgaggag
ttgcggggcgaaattattgtggtgaaaaatgagctggaacagctgaagagcgagtatctg
aatgtttctaagcgcctcgaagaagcgcagaacgaaactgagcggctcatgaacaagcgc
tccatgtgtatttctactcgcgaagaaaagatgcgctccatccgggaattgggatccctt
ccccctccggccgagctcgacaagcactcgggcaagtccactgaggcactcaaaaattcc
atcgagggcgtcaataagaagttgaaaaagtattcgcacatcaacaacaaggcgttcgac
caatacatcaattttagtgagcagcgcgaatcgctgctggtgcgcaaggctgaactggac
caaggtgccgaaaaggtggaggagctcgtatcgagtctcgaccaacagaaggacgaggcc
atcaatcgtacctttcgcggggtcagcgcccatttcaaggacgtgtttgaagagctcgtt
cccaatggggcgggtgagctcattttacgcacggccatggacgaagcgatggaggacgat
gcgaacgatacggatcaggacgacgattccgtcaacgcggattctccgaaaaaggccaag
ggtttcgacgcgaacaatccggatgtcaatttgtaccgcggtattggcatccaagtacgt
ttttcggccgtgggcgaaaactatctcatgtcccagctgtcgggtggtcaaaaggccttg
gtctcgctggccctgatttttgctattcaacggtgcgatccggctcccttttatatattg
gacgagctggaccaggcgttggatgcctcgtaccgtgcggcggtggccaatctgattcaa
aagcaggccacatccacggagaatccaacacagttcattgtgagtaccttccgtccggaa
ctggtagcgattgcgaatcgttgttacggaatttcattgcagaacaaggtgagtcgcatc
cacccgttgagtaagaaggatgcgttacactttatc
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