KEGG   Phaeodactylum tricornutum: PHATRDRAFT_52678
Entry
PHATRDRAFT_52678  CDS       T01075                                 
Name
(RefSeq) DNA polymerase epsilon catalytic subunit that participates with PCNA in late in S phase DNA replication
  KO
K02324  DNA polymerase epsilon subunit 1 [EC:2.7.7.7]
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03030  DNA replication
pti03410  Base excision repair
pti03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    PHATRDRAFT_52678
   03410 Base excision repair
    PHATRDRAFT_52678
   03420 Nucleotide excision repair
    PHATRDRAFT_52678
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:pti03032]
    PHATRDRAFT_52678
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATRDRAFT_52678
Enzymes [BR:pti01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     PHATRDRAFT_52678
DNA replication proteins [BR:pti03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   DNA polymerase epsilon complex
    PHATRDRAFT_52678
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     DNA polymerase epsilon complex
      PHATRDRAFT_52678
SSDB
Motif
Pfam: POL2_thumb DUF1744 DNA_pol_B_exo1 DNA_pol_B zf_DPOE_2 DNA_pol_B_exo2 RNase_H_2 zf-DPOE Beta-tre_PLH30
Other DBs
NCBI-GeneID: 7198958
NCBI-ProteinID: XP_002185008
JGI: 52678
UniProt: B7GD85
LinkDB
Position
27:304071..310884
AA seq 2155 aa
AGLDLYFSTDSGHSFKSTILYRPYFYVLPDLTGVGPEHVAIVLELLQTTLTRLGETALHG
CHIVTKTDLDQPNHLAPKHQHPNGRKVLKMVCDSVQQLMQLREIVRDVVHQNQARKTSAP
TFQPHNDQAYLQDPLALLVDMREYDVPYVVRTCTDLDIRAGTWYDVHLLDDPEDDFGGVR
LRNPDRESKANPTFLAFDIECTKAPLKFPSADVDEIFMISYMVSTPQGGQGFLVTSRSVV
AADVHDFEYTPQPNYPGPFTIFNEANEQALLERFFAEYQRWKPQIVVTYNGDFFDWPFVE
ARAKLYGLDLYQQTGVCRIQDEYCGRTSVHLDAFHWVQRDSYLPQGAQGLKAVTKYKLGY
DPVEVDPEDMLRFAHEKPVHMATYSVSDAVATYYLYEKYVHLFIFSLSTIIPMGPEDVLR
KGSGTLCEALLMVQACQKSIICPNKQVDEVAKFHKGHLLESETYIGGKVECLETGVYRSD
IEYEFDLQPSAFQQLIDNVDRDLTFAIEVEGGQQRDDIVNYGEIRTQIVHELEQLRDRPQ
RTEKPYIYHLDVGAMYPNIILTNRLQPSAIVDDATCAACDYNQEKNGCKRPMEWVWRGDH
NPATRNEYDRTKDQLAREPQRDNLSFAQLPDSEQAILVAERLKTYARKAYKRTKVTEENT
RQDVVCMRENNFYVDTVRQFRDRRYEYKKLNKTWKKRVSSAKDAATKKECEDRVLVYDSL
QIAHKCILNSFYGYVMRRGARWRSMEMAGIVTKTGADIITQARVLVEQIGRPLELDTDGI
WCILPRSFPDVYTFQSRDGSHLKLEYPCVMLNADVHNKFTNHQYQTLVDPVRGIYETRSE
CSIFFEVDGPYRCMVLPASTEEGKLLKKRYAVFNFDGSLAELKGFELKRRGELELIKTFQ
SQVFERFLDGSSLKDCYESVAEVANHWIDVIDTRGDSLDDEELVGLISENRSMSRQLDDY
GDQKGTSQTTARRLGEFLGAEIIKDKGLNCKFIIAEQPYGAPVTDRAIPTAIWKAESSVM
KHFLRKWLKSPGLDGDALDIRNVLDWDYYLDRLGKSIQKIITIPAALQKIPNPVPRVEHP
GWLTSKVNHLNDRFQQQSIQSAFSVQAKNPLVRINELDIEDSGPSSRESKRPVVHRMRRH
RVKTLDSTVEVDAEPHAIKERVSLSKEKFGDWLAQKKKLWRKLRSQRSVPAKSDGVDRAD
KKARTAHTIESYVRDAALAISQKEWQIVEMREISGSGELVLWTMVGTDSLQKIVVTVPRT
VYISTRVEAICTSSDIHSFRKVDRHLPRGRCTSYLYEVCMPEYVYRDQSWISSIEPVQHL
DKAEFMLESVFESGVPLLNRALTELGSFCRVKTESQSSKGRKGYLLTDLIRVERPATKEY
LHRDISFSRIFLYVRTHPRTKTGVVALYVIDNGKTLLENTSGREGTHRSSGVDISRPAEA
EPGTVDVGCSCHIWIIKPGSKSAQRNVTIKQSSSGPSLILLSSSQPAVSLRRYMSTFGSL
PVVSMNFPPGPSHNPDISTLPALNWEQPAVQLCFEAYLFMYIIAFPKRVSYARYGRVPLG
NLGADENMAVYDVNFSRLIGKNRAVSWANPRLGKPDLGANFMVSEDEIWGDDDELVSPVI
RRPGCYRSICVDIDVYDLAIAALTDLSSSLATGGPGLLASQANPSSPNNVALFDSSFGMS
TIAGPLGDEMSTVVSLPIARALVCGWLKDAMNAQSDVADELLHHVYRLISSPQALLHDPA
LHRAVHGLMKTAFFRILGELQRLGCSIIYASFHRITVATNKIELADAEEYINFVIATARK
RANENNEQGDSLSRVALRPRQFHTHFVFLDEYNFGSVQLERVEKLDLESENDFNIPESEH
KSTVVVPSVITAWSVMNYLGSQIGHEYFRAIIGRFSKDVFKKQMELVALGDRLSLTGIND
FDSQLLDHKRQMVRKHFASYLTRAVSEILKDSAEDLILPPMYTGKSSPIVPALEFIKNVT
VILELDSDIETEVHVLKRSLLAQIGVAEYAKAALWENPCPKYILPDVFCTECYESRDLNL
CYVPPREIDNKVEKDWVCEDCGSSYDVGVIERRLISLVNRKVVRYQLQDVRCTKTNRVAT
RALAALSDCSAGLKLDLTPKSAKIEVTLLRSLADYHGLECLRDTTDSILSSHVVF
NT seq 6468 nt   +upstreamnt  +downstreamnt
gccggtctcgatctctacttttccaccgattcgggacattccttcaagtccaccattctc
tatcgaccctacttttacgtgctgccggatcttaccggagtcggaccggaacacgtcgcg
attgtcctcgaactcctgcaaaccacgctcacgcgactcggagaaaccgctctccacgga
tgccacatcgtcaccaagaccgatctcgaccaacccaaccatctcgcacccaaacaccaa
caccccaacggacgcaaggtcctcaaaatggtctgcgacagcgtacaacaactcatgcag
ctccgggaaatcgtacgcgatgtcgtccaccagaaccaagcacgaaagacctcggctcca
acctttcaaccacacaacgatcaggcctacctgcaggaccccctcgcgctcctcgtcgac
atgcgcgagtatgacgtcccctacgtcgtccgcacctgtacggacttggacatccgggcg
ggaacctggtacgacgtccacttgctcgacgatccggaggacgactttggcggcgtccgc
ttgcgcaatcccgaccgcgagtccaaggccaatccaacctttctcgcctttgatattgaa
tgcaccaaggctccgctcaagttcccctccgccgatgtggacgaaatctttatgatttcc
tacatggtcagtactccacagggtggacaggggttcctcgtcacgtctcgttccgtcgtc
gccgccgacgtgcacgactttgaatacacaccgcaacccaactaccccggaccctttacc
atcttcaacgaagccaacgagcaggcactgttggaacgattctttgccgagtaccagagg
tggaaaccgcagattgtcgtcacctataacggcgactttttcgactggccctttgtggaa
gcccgggccaaactctacggactcgatctgtatcagcaaacgggggtctgccgaattcag
gacgaatactgtggacgcaccagcgtacatctcgacgcctttcattgggtccagcgtgat
tcctacctcccccagggcgcacagggtctcaaggccgtcaccaagtacaaactcggatac
gaccccgtcgaagtcgatcccgaagacatgctgcgctttgcgcacgaaaaacccgtacac
atggccacctactccgtttccgacgccgtcgcgacctactacctctacgaaaagtacgtc
cacttgtttattttctcgctctccaccatcattcccatgggacccgaggatgtcctgcgc
aaaggtagcgggacattgtgcgaggcgctattgatggtgcaggcttgtcaaaaatccatc
atttgcccgaacaaacaggtcgacgaggtcgccaaatttcacaaggggcacttgctggag
agcgaaacctacattggcggaaaggtggagtgcctggaaaccggtgtataccgtagcgac
atcgagtacgagtttgatctccaaccgtccgcctttcagcaattaatcgataatgtggac
cgggatttgacctttgcgattgaagtggagggcggtcaacaacgtgacgatattgtcaat
tacggggagattcgcacccagatagtccacgagctggaacagctccgggaccgaccccag
cgcaccgaaaaaccctacatttatcatctggatgtcggtgccatgtaccccaacattatt
ctaacgaaccgcctgcagccgagtgccatcgtggacgacgcgacgtgcgccgcgtgtgat
tataatcaggaaaagaacggatgcaaacgaccgatggagtgggtgtggcggggtgaccac
aatcctgccacccgcaacgagtacgaccggaccaaagatcaactcgcgcgggaaccccaa
cgtgacaatttgtcctttgcgcagcttcccgacagcgaacaagccatcctggtcgccgag
cgcctcaagacgtacgctcgcaaggcctacaaaagaaccaaagttacggaagagaatact
cgacaagacgtggtgtgtatgagagagaacaatttttatgtggacacggtccggcagttt
cgagatcgtcgctacgaatacaagaaactcaacaagacttggaagaaacgggtgtcgagc
gccaaagatgccgcgaccaaaaaggaatgtgaagatcgagtcttggtctacgattccttg
cagattgcacacaaatgtatcttgaacagtttttacggatacgtaatgcgtcgaggtgct
cgatggcggtcgatggaaatggcgggaatcgtcaccaagacgggagccgacattatcaca
caggcccgtgtattggtagagcagataggtcgacctttggaacttgatacggatggcatt
tggtgtatattgccccgtagtttccccgacgtgtacacgttccagtcccgagacggctcc
cacctcaaactggaatatccttgcgtcatgttgaacgctgatgtccacaataagttcaca
aatcatcaataccaaactttggtcgatccagtccgcgggatatacgaaacgagaagcgaa
tgctccattttctttgaagtcgacgggccctatcgttgcatggtgcttcccgcgagcacg
gaagagggcaagcttttgaaaaagcgctacgccgttttcaactttgacggctctctcgcc
gaactaaaaggattcgagctgaaacggcgcggggaactcgaactcattaaaacatttcaa
tctcaagtttttgagcgctttttagacggaagctctctcaaagactgttacgagagtgtc
gccgaggttgcaaatcattggattgatgtgatcgatactcgtggagacagtcttgatgac
gaggaacttgttggtctcattagtgaaaaccgtagcatgagtaggcaattggacgattac
ggagatcagaaaggaacctcccaaacaaccgcgcggcgtcttggtgagttccttggcgcc
gaaattataaaggacaaaggtctgaattgcaagttcatcattgcggagcaaccttacggt
gctccggtgacagatcgggccattccgaccgcaatttggaaagcagaatctagtgttatg
aagcactttttgcgcaagtggctcaagtcgcccggcttggatggtgacgcactcgatatt
cggaacgtcttggactgggattactacctcgatcgtctcgggaaatcgattcagaagatc
atcactatacctgctgctctgcagaagatccctaatcctgtccctcgcgtagagcatcct
gggtggctcacgtccaaggtcaatcatttaaacgaccgctttcaacagcagagcatacag
tctgcgtttagcgtacaagcaaagaatcctctggtgcgaattaatgagctcgacattgag
gactctggaccttctagtcgtgagtcaaaaagaccagtggttcacagaatgcgccggcac
cgagtcaagacattagattcaacagtggaggtggacgctgaaccccatgccataaaagag
cgagtcagtctatctaaggaaaaatttggtgactggcttgcgcagaagaaaaaattatgg
cgaaagttgcggagccaacgaagtgtgcctgcaaaatcggatggtgttgaccgagcggat
aagaaggcacggacggcgcacactatagagagttatgtgcgggatgcagcgttggcaata
agtcagaaggagtggcagattgtggaaatgcgtgaaatctccggatcgggtgagcttgtt
ctttggacgatggtaggaaccgattcgctacagaagatcgtcgtcacggttcctcgtacg
gtttacatatcgactcgagtagaggctatctgtacttcatccgatatccattccttccgg
aaggtagatcgtcatcttccacgtggtcgctgtacttcctatctgtacgaagtctgcatg
ccggaatatgtgtatcgagatcaaagctggattagttccattgaacccgtgcaacacctc
gataaagctgagtttatgttggaaagtgtattcgaatcgggggtaccactactgaatcga
gccttgaccgagcttggatcattttgtcgagtaaagacggaaagccagagttcaaaagga
cgcaagggctaccttttgacagatcttattcgagtggagcgccctgcgactaaggaatat
cttcaccgagatatctctttcagccgaattttcctttatgtccggactcatccgaggacc
aaaactggtgtcgttgcgctttacgtcattgacaacggcaagacgctactggagaatact
tctggtagggaagggactcatcgatcttccggcgtcgacatcagtagacctgctgaagca
gagcccggtactgtcgatgtaggttgttcttgtcatatctggatcattaaacctgggtca
aaatcggctcagcgcaatgtgacgattaaacagtcttcaagcggtccatccttgattctt
ctatccagcagccagcctgcagtcagtctgcgacgatacatgtccacatttggatctttg
ccggttgtctcaatgaactttccaccgggtccatcacataaccctgacatttcgacgcta
cctgccttgaattgggaacagcccgcagttcagttgtgtttcgaagcatatctgttcatg
tacattatcgcattcccaaagcgtgtctcctacgcacgatacgggcgcgtgcctcttggc
aatctaggcgccgacgaaaacatggcggtatatgacgtgaatttcagccgtttgattggc
aaaaatcgagctgtatcttgggcgaatcccaggttaggcaagcccgaccttggcgcaaac
ttcatggtatctgaggacgaaatttggggcgatgacgacgagcttgttagccccgttatt
cgtcggccaggttgctaccgatcaatctgcgtcgacatcgacgtctacgatctagcaatc
gctgcgcttacagatttgtcttcttcgctagcaactgggggacctgggttgctagcttct
caggcaaatccaagctctccgaataacgttgctttgtttgactctagtttcggtatgtct
actattgccggtcctcttggggacgagatgtcaaccgtcgtgtcgcttccgattgcccga
gctctagtttgtggctggcttaaagacgccatgaatgcacaaagcgacgtggcggacgag
ttacttcatcatgtctaccgtctcatttcaagccctcaggcattactccacgatcctgct
cttcatcgtgctgtccacggtttgatgaagacagccttctttcgaattcttggtgaattg
cagcggttgggctgctcaatcatctacgcttccttccatcgaattaccgtcgctacaaac
aagatcgaacttgctgacgcggaggagtacattaactttgtcattgcgacagcccgtaag
agagccaatgaaaacaatgaacagggcgactctctctcaagggtggcgctacggccgaga
caatttcacactcactttgtatttcttgacgagtataactttggatctgtacaactggaa
agagttgagaagttagacttagagagcgaaaatgactttaacattccagaaagcgagcac
aagtccaccgttgtcgttccgtccgtaataacagcttggagtgtaatgaactatctcgga
agccagatcggacatgaatatttccgtgcaataattgggcgattctcgaaggacgtcttc
aaaaagcagatggaactggtcgctctaggcgatcgtttgtcgctgacaggaatcaatgac
tttgattcgcaacttttggaccacaagagacaaatggttcgaaagcactttgcgtcctac
ctaacacgagccgtaagtgaaattctaaaagacagtgccgaggatttgatccttcctccg
atgtatactgggaaatcaagtccgatcgtacctgctttggagttcataaagaatgttacc
gtcatcctcgaactcgattcagatatcgaaaccgaagtccatgttttgaagcgtagcttg
ctagctcaaatcggagttgcagagtacgcaaaagcggcactctgggagaatccgtgtccg
aaatatattctgccggatgttttttgtacggagtgttatgaaagccgtgatctcaatttg
tgctatgttcctcctcgcgaaatcgacaacaaagttgagaaggattgggtttgtgaagat
tgtggatcttcttatgacgtcggtgtaattgagcgacgattgatcagtcttgttaatcgc
aaggtggttcgataccagctgcaggacgttcggtgcacgaagaccaaccgcgttgccacc
agagctcttgctgctctttcagattgctctgctggtctcaagctagacctaactccgaag
tctgccaagattgaggtaactcttctgcgcagcctcgccgactatcacggacttgagtgt
ttacgcgacacgacggatagtatcctgtccagtcacgtcgtgttctag

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