Phaeodactylum tricornutum: PHATRDRAFT_53969
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Entry
PHATRDRAFT_53969 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K08737
DNA mismatch repair protein MSH6
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
PHATRDRAFT_53969
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_53969
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
PHATRDRAFT_53969
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MutS_V
MutS_III
MutS_I
MutS_IV
MutS_II
MTA_R1
nSTAND_NTPase5
Motif
Other DBs
NCBI-GeneID:
7196100
NCBI-ProteinID:
XP_002176657
JGI:
53969
UniProt:
B7FP72
LinkDB
All DBs
Position
1:<808636..>813141
Genome browser
AA seq
1423 aa
AA seq
DB search
MAPSIPKAAATAAVTNGSRGAKNLKQGNLFSFFTTSRKSSATTKPSSPSVPLESTNAPVP
GDTKPSTDATTHSPKSTTKRPLTPPLRVGDVLQVYWPDDKAYYQGTLVQIRRATSAPLHC
IDYGDGQAPEWIDLNTTQYQRVSNDNQQQNIDNNNNRNQHKRRRIPEPDEPDEEAEFEFS
GDLEEPESCADEDDESAYEQDEQNDNDDENEDQWMVTDDEDEAPRKPKRHSVSSRRPSLS
KSRPTPSVTVTAHPPAAPHQTPARPDVSTTPSGPKRNPPHVTPSLAGASLATNTQPYPSP
SLAATPSPTHATQTKGKPPMFEKGVVNIAGSHAHNHLPFLQNPRDAQGRTPDHPDYDRRT
LKVNSRDWLNVTGGNMTDAVQQWWDLKARYADTVLLFKTGKFYEMFHADADVGVQVCGLL
YMKGHVAHAGFPEISYGPMADQLVRAGYKVARVEQTETPDALAVRKKAHHRRNGPAPKVV
NREVCSILTLGTRTFGYLDDDTHIATGQGGVGPLLAIRETLVDQGERQDDVEVEVQQAPV
CEYGITLVDAVHGVVTIGQFADDVRRSRMDTLLTNFAPSEILVEGGPNGASDTLLSLIRT
AQKTSLQSTRLEIIRATEQFPQSTALDPEIRRKLDRPLSQIHPWDVSETLDELHRRRYYP
RASKQQTDHVSVSRWPAVLRAAVEGGATLALSSFGAVLFYLQRNLVDGELLSMGVVKAYI
PPSSSTVTEESPSRIQTMAERDSWSEAGVDIDDQRTTAPLSTKTSPNVTQATQDPVPMQF
EMVEAINIENDINHMALDGTTLHNLEILYNSVDHKANGSLWSKINLTKTPHGSRLLRAWL
LRPLFRRADIDRRADAVQELVSGGAGMALSEARSVLAKCGDIERLLSRVHSMSGMTRIPG
EEDDADDGSSYYPSDRAVLYETSTYTKRKVGDFSKVLKGLQHATQIPELFDGIEIQSGLL
SKIVRFTDQGGCFPNMIQELEWFFENFDLDQAAKGFFEPSRGIDDLYDQACDAIAHIQSE
LNDYKEEMCSTYLQPRSAARSSWKYINTKPESKEKYTIELPASVRVPDNFILKGKRGSGT
KQMNRYRTAQLEHFVQEFENAYEVQKKRKARGMQLIFAKFDSMRSLWAAAAQATSLLDAI
GALAQTASKPGYTRAKILDCPQHASPTIRVTGGRHPCIESSIGSNDFIPNDLSLGTETSQ
DNASRVLLLSGPNMGGKSTLLRQTCLISILAQIGCFVPAEDCALTPIDRIYTRLGATDRI
LLGQSTFFVELAETAAALRGATRRSLVIMDELGRGTSTFDGTAIASSVVKHLVDRSKCLS
LFATHYHSLLEEWKHNRNVRLGHMECIVENGITTSRPENEEKDESTITFLYTLGEGVCPK
SFGINVARLAGLPEDVLSNAKRISSEFEQEVNGNGSRATSPKL
NT seq
4272 nt
NT seq
+upstream
nt +downstream
nt
atggctccgtcgatacccaaggccgccgccaccgccgccgtcacgaacggcagccgcggt
gcaaagaatctcaaacagggcaatttgttttccttctttacgacatcccgcaagagctcc
gcaacgaccaagccgtcgtcaccgtccgtacctctcgaatctaccaacgctcccgtcccc
ggtgacaccaaaccctccaccgacgcgacgactcactccccaaagtccaccacgaaacgt
ccgttgacgcccccgttgcgggtaggggatgtcctccaggtctactggccggacgacaaa
gcctactaccaaggcacgttggtccagatacggcgtgcgacgtcggcgccgctccactgc
atcgattacggagacggacaagccccggaatggatcgatctcaacacgacccagtaccaa
cgcgtctccaacgacaatcagcagcagaatatcgacaacaataacaaccgaaatcagcac
aagcgacgacgtattccggaacccgacgagccagacgaagaagccgaattcgagttttcg
ggagacttggaagaacccgagagttgcgccgacgaagacgacgagtcggcctacgagcaa
gacgaacagaacgataacgacgacgagaatgaggatcagtggatggtcaccgacgacgaa
gatgaagcaccgcgcaaacccaagcgtcacagtgtatcatcccgcagaccctcactctcc
aagtcccgtccaacaccctccgtgaccgtcacggcacacccgccagctgcccctcatcag
acaccggcccgacccgacgtttccaccactccttccggaccaaagcggaacccaccgcac
gtgacaccttccctggcgggggcttcgctcgcaaccaacactcaaccgtacccttcaccc
tccctcgccgctaccccctcccctacccacgctacccaaaccaaaggcaagcctcccatg
ttcgaaaaaggtgtcgtcaacattgcgggttcccatgcccataaccatttaccatttctc
cagaatccccgcgacgcccagggacgcactccggaccacccggactacgaccgtcggaca
ctcaaggtcaattcccgagactggctcaacgtcacgggcggaaacatgaccgacgccgtc
caacagtggtgggacctcaaagcccgctacgccgataccgtcctcctcttcaaaaccgga
aaattctacgaaatgttccacgctgacgccgacgtgggcgtccaagtctgcggactgctc
tacatgaagggacacgtcgcccacgccggctttccggaaatatcctacggacccatggcg
gatcaactcgtccgcgccggctacaaggtagcccgtgttgaacagaccgaaacacccgat
gccctcgcggtacgcaaaaaggcacaccaccgacggaacggacccgcccccaaagtcgtc
aatcgcgaagtctgctccatacttacgctcggcacccgcacctttggctatctcgacgat
gacacgcacattgccactggtcaaggcggcgtgggacccctcctggcgattcgggaaacg
ctcgtggaccaaggggaacggcaagatgacgtagaggtggaagtgcagcaggcgcccgtt
tgcgagtacggtatcactcttgtcgatgcagttcacggggtcgtgacgattggacagttt
gccgatgatgtacgccggtcccggatggatactctcttgaccaattttgcaccctccgag
attctggtagagggcggtcccaatggtgcatccgatactctcttgtcgctaattcggacg
gcccagaaaacctcgctccagtctacgcgtttggaaatcattcgggccacggagcaattc
ccgcagtccaccgcactggatccggagattcgccgcaagctcgaccgtccgttgtcgcag
attcatccctgggatgtgtcggagactctggacgagctgcatcgccgacgatattatccg
cgcgcttcgaagcaacaaaccgatcacgtgagtgtaagccgctggccggccgtgctgcgg
gccgcggtggaaggcggggccaccctggccttatcaagttttggcgccgtcttgttttac
ttgcagcggaatcttgtggacggtgagctactttccatgggtgtcgtcaaagcctatatt
ccaccgtcctcgtcgacagtcacggaagagtcacccagccgtattcagacaatggccgaa
cgcgacagttggagtgaagctggtgttgacatcgacgatcagcgcactacggcacctttg
tcaacgaagacttcgccaaacgttacacaggcaacacaagatcctgtgcccatgcagttt
gagatggtcgaagccattaatatcgaaaacgatatcaatcacatggcactggatggaacg
actttacacaacctcgagatattgtacaactccgtcgaccacaaagccaacggtagtctg
tggtccaaaatcaaccttaccaagactccgcacggatcccggttgcttcgtgcatggttg
ctccgtcctttgttccgccgagcggacattgatcgacgggccgatgctgtgcaggaactc
gtgtcgggaggagccggcatggccttatcggaagcgcggtctgttctcgccaagtgtgga
gacattgagcgattattgagccgggtccacagtatgagtggaatgacccggattcccggg
gaagaagacgatgcagacgacgggagcagttactatccgagcgaccgcgcggtgttgtac
gaaacatccacctatacaaaacgcaaggttggcgacttctccaaagtgctaaaagggttg
cagcacgcaacacagattccggagctctttgacggcatcgaaatacaaagtgggctgctg
agcaaaatcgtgcgctttacagatcagggtgggtgttttcccaatatgatccaggaactt
gaatggttctttgaaaactttgatcttgaccaggctgccaagggattcttcgaaccatcc
cgcggaatcgatgatctgtatgaccaggcttgtgacgccatcgcgcacattcagtccgaa
ctgaacgattacaaggaggaaatgtgcagcacctacttgcaaccccggtctgccgccaga
tcgtcctggaaatacatcaataccaagcccgagtcaaaagaaaagtacacaatcgaactt
ccagccagcgtacgcgttccagataacttcattctcaagggaaaacgtgggagcggcacc
aagcagatgaatcgatacagaacggcgcaattagagcactttgtccaggagttcgaaaac
gcgtatgaagtacaaaagaaacgcaaggctcgaggcatgcaacttatatttgccaaattt
gattcaatgcggtccttgtgggctgctgctgcccaagctacatcgttgttggatgcgata
ggggcgctagcccagacggcttcgaaacccggctatacacgagccaagatcctggattgt
ccgcaacatgcttccccgactattcgagtgacgggcgggcgacacccttgtattgaaagt
tcgattggatccaacgattttatccccaacgatctttcgttgggcacggaaacgtcgcaa
gacaacgcctcccgagtgcttttacttagcggacccaatatgggtgggaaaagcacgctt
ttacgacagacttgtttgatttcgatacttgcccagattggttgcttcgttccggccgaa
gactgcgcgttgactccgatagatcgcatctatactcgactaggtgccaccgaccgtatt
ctattaggacaatcgacattctttgtggagttagcggagaccgccgctgctcttcgagga
gcgacacgtcgcagtctggtaataatggatgagcttggccgaggaaccagtacttttgac
ggtaccgcgattgcgagctccgttgtcaaacaccttgtcgatcgaagcaaatgcttgagc
ctgtttgcaactcactaccactccttgttggaagaatggaaacataataggaacgtacgg
ctcggacatatggagtgcatcgtcgaaaatggtatcactacttctcggcctgagaatgaa
gaaaaagacgaaagtacaattacttttctatatacgctcggcgagggggtttgtcccaag
tcgtttggcataaatgtggctcgcctggccggcttaccagaagatgtcttgtcgaacgct
aagcgcattagttccgaatttgagcaggaggtcaatggcaatgggtcgagagccacatca
ccaaagctatag
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integrated database retrieval system
