Phaeodactylum tricornutum: PHATRDRAFT_54072
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Entry
PHATRDRAFT_54072 CDS
T01075
Symbol
ERCC2
Name
(RefSeq) xeroderma pigmentosum group D complementing protein
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03022
Basal transcription factors
pti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHATRDRAFT_54072 (ERCC2)
09124 Replication and repair
03420 Nucleotide excision repair
PHATRDRAFT_54072 (ERCC2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_54072 (ERCC2)
03036 Chromosome and associated proteins [BR:
pti03036
]
PHATRDRAFT_54072 (ERCC2)
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_54072 (ERCC2)
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
PHATRDRAFT_54072 (ERCC2)
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHATRDRAFT_54072 (ERCC2)
Chromosome and associated proteins [BR:
pti03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
PHATRDRAFT_54072 (ERCC2)
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHATRDRAFT_54072 (ERCC2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD_2
Helicase_C_2
HBB
ResIII
DEAD
SLFN-g3_helicase
AAA_11
NPHP3_N
Motif
Other DBs
NCBI-GeneID:
7197063
NCBI-ProteinID:
XP_002177848
JGI:
54072
UniProt:
B7FRR5
LinkDB
All DBs
Position
2:complement(24858..28911)
Genome browser
AA seq
782 aa
AA seq
DB search
MRFDLDGLDVFFPYDRIYLEQHQYMRALKQSLDAGGHCLLEMPTGTGKTVCLLSLITSYQ
FANPSAGKLVYCTRTVPEMNHVMEELATVLAYRSQELQRHQEENILPMDTDGDIENVPVA
GTLCLSSRRNMCVHERVMAESDREAVDAACRSLTASWVLEEAQKRPGSIETCSYYDNFHA
AGESTSMPSGVYDLEELQKWGKRRGWCPYYLTRQAINHANILVFNYQYMLDPKVAKMVSK
ELEAESIVVFDEAHNIDSVCIEALSVTINDRGLEQATRSLGRLSSEVSRLKASDNQRLQT
EYQNLVNGLIDQGLLDAPANDAGLTSNVLNPDVLNEAVPGNIRRAEHFIGFMKKVVEHLK
ARLRSVAGPNGGVRSETPLAFLHRMTNGTSLEAKPLRFAYSRLSSLLRTLQVSNLDDFNS
LTDVADFSSLLAAYSEGVAKFAIIMEPNGSSIPGATDPVIQLVCLDSSLAIAPLFKRFGS
VIITSGTLSPIDLYPKLLQFEPCVSESLSMSTFRPCIRPLVITKGSDQLAVSTKYEDRGD
MGVIRNYGTMLVELCSTIPDGVVAFFTSYSYMESLISEWDAIGILRELTKSKLVFIETKD
VVETTLALDNYRRACDCGRGAVFLSVARGKVSEGINFDRHYGRAVIMFGVPFQYTLSHTL
RARLEYLQTHYQIREQDFLNFDAIRQASQCVGRVIRSKTDYGLMIFADSRYNRHDKRSKL
PKWIQQFMSDHFLNLSTDMALSHVKQFLRLMGQPIDQEALQSNLPSLSVVPEKDRAHPEQ
LR
NT seq
2349 nt
NT seq
+upstream
nt +downstream
nt
atgagattcgatttggacggcctggatgtgttctttccgtacgatcgcatctaccttgag
cagcatcagtacatgcgagcactgaaacagtcgctggacgcaggtgggcactgtctcctg
gagatgcctacgggaacgggaaaaaccgtatgtttgctatcgctgattacttcctaccag
tttgcgaatccgtcggcgggtaagctcgtgtattgcactcgaaccgttccggaaatgaat
cacgttatggaagaactcgcgacagttttagcgtaccggtcgcaagaactacaacggcac
caggaagaaaacatcttgccaatggacactgacggggatattgaaaacgttccggttgcg
ggcacattgtgtttaagcagtcgacggaatatgtgtgttcacgagcgagtcatggccgaa
agcgatcgggaagccgtcgatgcggcttgccgaagtctaacggcgagctgggttttggaa
gaagcacagaagcgtccgggctcgatcgaaacctgcagctattatgataattttcatgct
gcaggcgagtccacttcaatgcccagtggcgtgtacgatttggaagagctgcagaagtgg
ggcaagcggcgtggatggtgtccatattatctgactcggcaagccattaatcacgccaat
atactcgtattcaactatcagtacatgcttgatccaaaagttgccaaaatggtttcgaaa
gaactcgaagccgaaagtatcgtggtgtttgacgaagcccacaacattgatagtgtatgc
attgaagcgttatcagtgaccatcaacgaccgaggattggaacaagctacacgttctctt
ggacgcttgtcatcagaagtgtctcgcctgaaagcatctgacaatcaaaggttgcagacc
gagtaccaaaatctcgtcaacggcttgattgaccaaggattactggatgcgccggcgaat
gatgctggactcacaagcaatgtgctcaatcctgatgttttgaatgaagccgtacccggc
aacattcgtcgagccgaacactttataggatttatgaaaaaagtcgtggagcatttgaaa
gctaggctgcgttccgttgcagggccgaatggaggtgtgcggagtgaaacgccgctagca
ttcttacatcgcatgacaaatggtaccagtctggaagccaagcctttgcggtttgcctat
tcccggctatcgtccttgctacgcaccctgcaagtttcgaatctggacgattttaattca
ctgacagacgttgcggacttttcaagtctacttgctgcttacagtgaaggagtcgccaag
tttgctattatcatggagccgaacgggtcctccattccaggggctacggaccctgtaatt
caacttgtttgtttggattcgtcactggctattgcacctcttttcaagcgattcgggagc
gtgatcatcacatcgggaacactgtcacccattgatctctatcccaaactgttgcagttt
gaaccttgtgtctccgagtcgctgtccatgtctacgttccgtccatgtattcgcccactg
gtgatcacgaaaggatcggatcagctggcggtatctacaaagtacgaagaccgaggtgac
atgggtgtcattcgaaattatggaaccatgttggtcgaactgtgcagtaccatccctgat
ggcgtggttgctttcttcacatcgtacagttatatggaatccctgatcagtgagtgggat
gcgatcggaattctacgagagttgaccaaatcgaagcttgtttttatagaaaccaaagat
gtggtcgaaaccaccttagctttggacaattaccgcagagcctgtgattgtgggcggggc
gccgtttttctatcagtagcacggggaaaagtatcggaaggtatcaactttgatcgacat
tacggacgagctgtgattatgtttggtgttccctttcagtacactctttcgcataccctc
agagctagactggagtatcttcagacacactaccagattcgtgaacaagactttctaaat
tttgacgccattcgccaagcttcacagtgtgttggtcgtgtcattcgaagtaagaccgac
tatgggctgatgatctttgcagacagtcgatataatcgccatgacaaacgatcgaaattg
cctaaatggatccaacaattcatgtccgatcattttttgaatttgagcacagacatggcg
ctttcgcatgtcaagcaatttctgcgcctcatgggacaacctatcgaccaggaggcgctg
caaagcaatttgccgtcgctttctgttgtcccagaaaaagatcgagctcatccagaacaa
ttacgatag
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