Phaeodactylum tricornutum: PHATRDRAFT_54092
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Entry
PHATRDRAFT_54092 CDS
T01075
Name
(RefSeq) chromatin remodeling-related protein
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
PHATRDRAFT_54092
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATRDRAFT_54092
03036 Chromosome and associated proteins [BR:
pti03036
]
PHATRDRAFT_54092
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
PHATRDRAFT_54092
Chromosome and associated proteins [BR:
pti03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
PHATRDRAFT_54092
PBAF complex
PHATRDRAFT_54092
GBAF(ncBAF) complex
PHATRDRAFT_54092
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
ATP-synt_Eps
Motif
Other DBs
NCBI-GeneID:
7197524
NCBI-ProteinID:
XP_002177949
JGI:
54092
UniProt:
B7FSA6
LinkDB
All DBs
Position
2:complement(510540..512781)
Genome browser
AA seq
674 aa
AA seq
DB search
MSEKNQANPKDNPVAMDVDGGDVGNRHPLTRIPADGMNPTNLLTGLYGARGERVRHLVHE
GALRLPTEALDLIGPTDAATSSRKFQLPGLDSVVRMSADPKVTSMRVTEITGKLVPSTEP
EQPPTFRTFATNKTVVTGSGPERLRGGGDDNDEEIKAPAPTAAPTEIAERTAATVTSSEP
VATHSSVVATVDKAPSVGVPEQTSTAPSIPAETILDSQPVLSLSLETSAPSLKRDASLPV
SSEISGTPAPVALEPIMATSLSVAPPTKADERILTKTEKSETVPPASVSAPDPVTKTSSA
TEVKPVQSTPEGRANKETSKSEETVPDVVALSKTPAPQWEQHIPGPSDEMQVDPASKTPK
PDWYDAARASEIEKSVLVEWFDQSASHRTEESYVQAREGILKIAAGIGNRYVSATMVRRS
VPGDAGSLLRLHAFLTSYAFINEDSMNDSAPTPVTLQQEVDKRHLWNDELKRALLDNVVE
QSRKRPKLLSSDTNENGLVFDWNAVAAAIGNGMDATECERQFLSLPMDDLTSTTERPITP
EPSLEGTPLSAKGNGELRAQVLQDIVDNSDPDVLRAATQAVFAATEDPTANLAALQNTTV
ASLLAGQALAQCRKEEANVANLLAGVVDLRMQKLENRLTLLDDLEGLLEAERVALELERR
DLYTARCRHWFGGP
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgtcggaaaagaaccaagcaaatccgaaggataatccggttgcgatggacgtggacggc
ggcgacgtaggcaatcggcaccccctcacgcgtattccggcggacggtatgaaccctacc
aacttactaacgggcttgtacggtgcccgaggcgaacgcgtacgccatctggttcacgaa
ggagccttacggttgccgaccgaagctctcgacctgatcggacctaccgatgcggccacg
tcgtcccggaaattccagctacccgggttggattccgttgttcggatgtccgcagatccg
aaggttacgagcatgcgagtaacggagattacgggaaagctcgttccatctactgagcca
gaacagccgccaacatttcgaacttttgccacaaacaagactgtagtcaccgggtcgggc
ccggagcgtcttcgaggaggtggtgatgacaacgacgaggagatcaaggcgcctgcacct
actgctgctccaacggaaattgccgaaagaactgccgcaactgtgacaagtagtgaacct
gtggcaactcactcctctgtcgtggcgacagtagacaaagcaccaagcgtgggcgtgcca
gagcaaacttccacagcgcctagcatcccagcggagactatcctagactctcagcctgtg
ctttcactcagtttggaaacaagcgcaccgtctctcaagagagatgcatctctaccagta
tcgagtgagatttctggtactccagctccggttgctcttgaaccaattatggctacctca
ctatccgtagcgccgccgacaaaagccgatgagcgtatcttgacgaaaacagagaagtcc
gaaactgtacctccagcttcggtatctgctccggatccagtcacaaagacatcgtccgcc
acagaagtcaaacccgtccaatctactcccgaaggaagagcaaacaaggaaacttcaaaa
tctgaagaaaccgtccccgacgtagtcgccctttcaaaaaccccggctccgcaatgggaa
caacacattcccgggccttccgatgaaatgcaggtcgaccccgcttcaaaaacaccgaaa
ccggactggtatgatgcggcgcgcgcgtcggaaatcgaaaagtctgtgctggtcgaatgg
tttgaccagagtgcctcccatcgaactgaagaatcatacgtgcaggcccgcgaagggatt
ttgaagattgccgccggtatcgggaatcgttacgtgtcagcgaccatggtacgccggagc
gtccccggggacgcgggtagtttgttacgcttgcacgcctttttaacatcgtacgcattt
atcaacgaagacagtatgaacgattcggccccgactcccgtgactctgcagcaagaagtc
gataaaaggcacttgtggaacgacgagctgaaacgtgcgttgctggacaacgtagtagag
caatctcggaaacgtccgaaattactttctagcgataccaacgagaacgggctggtgttt
gactggaatgctgttgccgcagcaataggtaacggaatggatgccactgaatgtgagcgg
cagttcctgagtctgccaatggatgacttaacgtcaactacagagcgaccaattactcct
gaaccgagtttggagggcacgccactttcggctaaggggaatggagagttgcgcgcccag
gtgcttcaagacattgtggacaatagtgatccggacgtacttcgagctgccacgcaagct
gtgtttgctgcaaccgaagacccgaccgccaatctagccgctctacaaaacactacggtc
gctagtctgttagccggtcaggctttggcacaatgtcgcaaggaagaagccaatgttgcc
aatcttttggccggagtcgttgacttgcggatgcaaaaattagagaaccgacttacttta
ttggacgatttggaaggtctcctggaggcagaacgagtggcgctggaattggagcggcgg
gatttgtatactgctcggtgtcgacattggttcggtggaccgtaa
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