KEGG   Phaeodactylum tricornutum: PHATRDRAFT_55141
Entry
PHATRDRAFT_55141  CDS       T01075                                 
Symbol
RRP
Name
(RefSeq) ribosomal RNA processing protein
  KO
K12589  exosome complex component RRP42
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHATRDRAFT_55141 (RRP)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_55141 (RRP)
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     PHATRDRAFT_55141 (RRP)
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     PHATRDRAFT_55141 (RRP)
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-GeneID: 7198906
NCBI-ProteinID: XP_002185033
JGI: 55141
UniProt: B7GCY0
LinkDB
Position
27:complement(32818..33965)
AA seq 354 aa
MDDSTPLLSRSEMDFIREGCHQNCRVDGRGRDEYRGYRIVTEGSMSHEDNSSTSNPPLIL
SNGSARLFEAARHAHEDVSLHMLCSVKAEVVHPSALHPAQGAMELHVESLTSSGPNSQRR
KTQDELEATLSKLLMRDLVDLEALCIVPYHYVWRLHVDLFVLTAGSSHGSLCDAASHVIR
AALQCTRLPAITSSTATANESHNGLAKASFRNKNPLFPHGGVELMVDGDLAVASPPPGVN
QAPIIVSVTVLANSEVLRRTPVSAVSVAPVLILDATPDEEACAVAQVHVAIDRSDGSNPL
ITALHQSRQGSLPLNVLTDVCAIALQGAMSAEAAYVIRPGRNDLGLLQEQFLFQ
NT seq 1065 nt   +upstreamnt  +downstreamnt
atggacgacagtactcctctactgagccgctccgagatggactttatacgagagggatgc
catcaaaattgtcgggtggacggtcggggtcgtgatgagtatcggggttaccggatcgtt
accgaaggaagcatgtcacacgaggacaacagcagtacgtctaaccctcccttgatcctt
tcaaatggttccgcacggctctttgaggcagcacggcatgcacacgaagatgtttctctg
cacatgttgtgttccgtcaaagctgaagttgtccacccgtcggctctgcaccctgctcaa
ggagcgatggaactacacgtggaaagtttaacctcgagtggaccgaactcacaacgacgg
aaaactcaagacgaacttgaagcgaccttatccaaactgttgatgcgcgacttggtagac
ctcgaagcattatgcatcgttccgtaccactacgtttggcgtttgcacgtggatttgttt
gtgctgacggcggggtcgtcacacggtagtctgtgtgatgcggcttcgcatgtcatacgc
gcggcgctccaatgcacgcgcctacctgctattacgtcatccaccgcgactgccaacgaa
agccacaatggtcttgcgaaggcttcgttccgcaacaagaatccgttatttccacatggc
ggtgttgaattgatggtcgacggtgatttggccgtagcttcgccgcccccaggtgtcaat
caagcacccattattgtttccgttaccgttttggcaaactcggaagttttgaggcgaacg
ccggtatcagccgttagtgttgcgccggttttgattcttgacgcaacaccggacgaagaa
gcctgcgcggtagctcaagtccacgttgccatcgaccgttccgacggaagcaacccgctt
attactgccttgcaccagtcacgccaaggatctttgccgctgaatgttttgacggacgtc
tgtgccatagctctccaaggcgccatgtcggcagaagctgcctacgtcattcgaccagga
cgcaatgacctggggctcttgcaggagcagtttctctttcaatag

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