Phaeodactylum tricornutum: PHATRDRAFT_55141
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Entry
PHATRDRAFT_55141 CDS
T01075
Symbol
RRP
Name
(RefSeq) ribosomal RNA processing protein
KO
K12589
exosome complex component RRP42
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
PHATRDRAFT_55141 (RRP)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_55141 (RRP)
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
PHATRDRAFT_55141 (RRP)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
PHATRDRAFT_55141 (RRP)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
7198906
NCBI-ProteinID:
XP_002185033
JGI:
55141
UniProt:
B7GCY0
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Position
27:complement(32818..33965)
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AA seq
354 aa
AA seq
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MDDSTPLLSRSEMDFIREGCHQNCRVDGRGRDEYRGYRIVTEGSMSHEDNSSTSNPPLIL
SNGSARLFEAARHAHEDVSLHMLCSVKAEVVHPSALHPAQGAMELHVESLTSSGPNSQRR
KTQDELEATLSKLLMRDLVDLEALCIVPYHYVWRLHVDLFVLTAGSSHGSLCDAASHVIR
AALQCTRLPAITSSTATANESHNGLAKASFRNKNPLFPHGGVELMVDGDLAVASPPPGVN
QAPIIVSVTVLANSEVLRRTPVSAVSVAPVLILDATPDEEACAVAQVHVAIDRSDGSNPL
ITALHQSRQGSLPLNVLTDVCAIALQGAMSAEAAYVIRPGRNDLGLLQEQFLFQ
NT seq
1065 nt
NT seq
+upstream
nt +downstream
nt
atggacgacagtactcctctactgagccgctccgagatggactttatacgagagggatgc
catcaaaattgtcgggtggacggtcggggtcgtgatgagtatcggggttaccggatcgtt
accgaaggaagcatgtcacacgaggacaacagcagtacgtctaaccctcccttgatcctt
tcaaatggttccgcacggctctttgaggcagcacggcatgcacacgaagatgtttctctg
cacatgttgtgttccgtcaaagctgaagttgtccacccgtcggctctgcaccctgctcaa
ggagcgatggaactacacgtggaaagtttaacctcgagtggaccgaactcacaacgacgg
aaaactcaagacgaacttgaagcgaccttatccaaactgttgatgcgcgacttggtagac
ctcgaagcattatgcatcgttccgtaccactacgtttggcgtttgcacgtggatttgttt
gtgctgacggcggggtcgtcacacggtagtctgtgtgatgcggcttcgcatgtcatacgc
gcggcgctccaatgcacgcgcctacctgctattacgtcatccaccgcgactgccaacgaa
agccacaatggtcttgcgaaggcttcgttccgcaacaagaatccgttatttccacatggc
ggtgttgaattgatggtcgacggtgatttggccgtagcttcgccgcccccaggtgtcaat
caagcacccattattgtttccgttaccgttttggcaaactcggaagttttgaggcgaacg
ccggtatcagccgttagtgttgcgccggttttgattcttgacgcaacaccggacgaagaa
gcctgcgcggtagctcaagtccacgttgccatcgaccgttccgacggaagcaacccgctt
attactgccttgcaccagtcacgccaaggatctttgccgctgaatgttttgacggacgtc
tgtgccatagctctccaaggcgccatgtcggcagaagctgcctacgtcattcgaccagga
cgcaatgacctggggctcttgcaggagcagtttctctttcaatag
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