KEGG   Phaeodactylum tricornutum: PHATRDRAFT_7848
Entry
PHATRDRAFT_7848   CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03018  RNA degradation
pti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHATRDRAFT_7848
  09123 Folding, sorting and degradation
   03018 RNA degradation
    PHATRDRAFT_7848
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATRDRAFT_7848
   03041 Spliceosome [BR:pti03041]
    PHATRDRAFT_7848
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     PHATRDRAFT_7848
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     PHATRDRAFT_7848
Spliceosome [BR:pti03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    PHATRDRAFT_7848
SSDB
Motif
Pfam: LSM
Other DBs
NCBI-GeneID: 7203058
NCBI-ProteinID: XP_002182333
JGI: 7848
UniProt: B7G509
LinkDB
Position
15:complement(<143193..>143597)
AA seq 135 aa
QLPLTLLRAANGSPILVELKGGDTYNGRVVNCDTFMNMNLQDVICTSADGEHFSKLPSCY
IRGSSIKYLRLPPSLLETAAAQQEEEERNSPFRGGRGRGRGRMDSSGTGRSGGRGRHHGS
DQGGRSGDTGDSGRG
NT seq 405 nt   +upstreamnt  +downstreamnt
cagcttccgctgacgttattgcgcgcggccaacggctcaccgatcctggttgaactcaaa
ggcggtgacacctacaatggccgggtcgtcaattgtgatacctttatgaacatgaatttg
caagacgtcatttgtacgagcgccgacggcgaacacttctccaagctaccgtcttgttat
attcgtggcagtagcatcaagtatttgcgcttgccaccgtccttgttggaaaccgccgcg
gcacagcaggaagaagaagaacgaaattcgccatttcgtggtggacgaggacgcgggcgt
gggcggatggattcctctggtacgggacgtagcggtgggcgtggccggcaccacggcagt
gatcaaggtggaagaagcggtgataccggagattcgggccgaggg

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