Phaeodactylum tricornutum: PHATRDRAFT_8810
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Entry
PHATRDRAFT_8810 CDS
T01075
Name
(RefSeq) DNA topoisomerase
KO
K03165
DNA topoisomerase III [EC:
5.6.2.1
]
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03440
Homologous recombination
pti03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
PHATRDRAFT_8810
03460 Fanconi anemia pathway
PHATRDRAFT_8810
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pti03032
]
PHATRDRAFT_8810
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATRDRAFT_8810
Enzymes [BR:
pti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
PHATRDRAFT_8810
DNA replication proteins [BR:
pti03032
]
Eukaryotic type
DNA Topoisomerases
PHATRDRAFT_8810
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Bloom's syndrome complex (BTR)
PHATRDRAFT_8810
FA (Fanconi anemia) pathway
PHATRDRAFT_8810
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_TOP3B
Toprim
Motif
Other DBs
NCBI-GeneID:
7196223
NCBI-ProteinID:
XP_002177365
JGI:
8810
UniProt:
B7FQA8
LinkDB
All DBs
Position
1:complement(<1754283..>1757066)
Genome browser
AA seq
868 aa
AA seq
DB search
ITILHVAEKPSIAQAIAHGLASAEGKSSNPSMRSKSLPVYELSNGISFPKAPHAKHFQHK
ITSVAGHVFNVDFPEKYQSWDSVDPAELFEAPIVRKPCKSSVVRHLEDEARGVHFIVLWM
DCDREGENINFEVLDCCMHVMKSGGSSNFDRVYRAYFSAINPSDIQKAYNSLGKPDKNQA
LSVDARQELDLKVGIAFSRYQTRYFQGRYGDLNSAVLSYGPCQTPTLGFCVQRYIDIQTF
KPEPYWVLELAVMKRGRSLRALWGSGRSFNKNKVEKLLLEALESGPFAKVTSVVAKDKKQ
GRPIPLNTVALLKACSKALGIGPHATLQTAERLYLSGYLSYPRTESSAYPKSFDIYGTLQ
QQSSDVRWGSYVRELLREGPNKSRGGIDMGDHPPITPCRATRAGELSGDMARVYDLVVRH
FIASVSQDAVWRSTQIDFAIEALGEKGVFTLRGKEPVSPGFLAVLLHTEYGEENIEVSVV
PGTTVRANLGIKEKMTTPPTYLTESELISLMEKNGIGTDASISTHIENVQKRNYVALESG
RRLVPSKLGIVLAQGYHQIDSSLVLPRVRSDIEDECNKIAKGLLSKDIVVQKAIDLFRNK
FDSFVNNISKMDVLFSTSFSKLEDVGKPFTRCGLTRRYLQFIEGPPPRLYNKWTETVYPL
PSGGIVKQWTGRVCSVENCNFELCLFSVGNPQRTFPLCPRCFNDSKWSLDADELPQDPTD
TEDEQKEKQITSIAGKRLVLECPLPDEHPSIEELTVSTDPESDGVLILDPHMGPKWRLVS
TRDPIIVYMPKGIEKITVLNKKDEALGVHLMQVDFKAGDSPFPDGELKYTSCFPEDEVLK
ARVRIYHGSDRLTASGRGGRGRGGRGGR
NT seq
2604 nt
NT seq
+upstream
nt +downstream
nt
atcactatcctacacgtagcggaaaaacctagtattgctcaggccattgcacatggattg
gcatcagcggaaggaaaatcatccaatcctagtatgcgaagcaagagtctccctgtgtac
gagctgtccaacggcatttcctttcccaaggctccacacgcaaaacatttccaacataag
atcacatcggtggccgggcacgtatttaacgtggattttcccgagaaatatcaatcgtgg
gattcagtggatccggccgaactctttgaggcgccaattgtgcgaaagccttgcaaatcc
tccgtagttcggcatttggaggatgaagcccgtggcgtgcatttcattgtgctttggatg
gactgcgaccgggaaggtgaaaacatcaactttgaagtactcgactgttgtatgcatgta
atgaagagcggtggtagctcaaactttgatcgcgtttatcgtgcttacttttccgcaatt
aatccgtccgatattcaaaaagcctacaactctttgggcaagccagacaagaaccaggcc
ctttccgttgatgcccgacaggaattggatttgaaagtaggcattgctttctcgcgctac
caaactcgatactttcaaggtcgctatggtgatctcaacagtgcagtgctttcctacggc
ccttgccagaccccgacgctcggcttttgtgtgcaacgctacattgacattcaaacgttc
aaaccggaaccgtactgggtgttggaactggccgtcatgaagcgagggcgatcgttgcga
gctctctggggctcggggcgttctttcaacaagaacaaggtcgaaaagttgttacttgag
gccttggaaagtggaccttttgccaaagttacgagcgtcgttgccaaagataagaaacag
ggacgaccaattcctttgaatacagtggcgcttctcaaagcttgcagtaaagcactagga
attggtcctcacgccacgttgcaaactgcagaacgactttatctgagtggctatctttcg
taccctagaaccgagtcttcggcctatccgaaatctttcgatatttatggcactcttcag
caacagtcatcagacgttcgatgggggagctatgtgagagaattacttcgagaaggtcca
aacaagtcgcggggaggcattgatatgggagaccatcctccaatcaccccatgccgtgct
actcgtgctggtgaactaagcggggacatggcgcgggtttacgatttagttgtgcgtcat
ttcattgcttctgtcagccaagatgcagtgtggcgttcaacgcagatcgattttgccatc
gaagctctgggagagaaaggtgtatttactcttcgaggcaaagagcctgtttcaccgggc
ttccttgccgtcctgttgcatacagaatatggcgaagagaatattgaagtttccgttgtt
ccaggtaccacagttcgtgctaacctcggcattaaagagaagatgacaacgccacccact
taccttaccgaatccgagttgatttcgttgatggaaaagaacggaattggtacggatgcc
agtatttcgacacacatagaaaatgttcaaaagcgcaattatgtcgctttagaatcaggc
cgtcgtttggtaccatcgaagctcggtattgttttggcgcaaggctaccatcagatagac
agctcgcttgtacttcctcgcgttcgttctgacatagaagacgagtgcaacaagattgcc
aaagggctattgagcaaggatattgttgtccaaaaggctatcgatttgttcagaaacaag
tttgattcgtttgtgaataacatctccaaaatggatgtcttgttcagcacgtcattttcc
aaacttgaagatgttgggaaaccgtttaccagatgtggcctaactcgtcgctacttgcaa
tttatcgaagggccaccacctcgcttgtacaacaaatggacagaaaccgtatatccttta
ccttcaggaggtattgtcaaacagtggacaggacgagtctgctcggttgaaaactgcaat
tttgagctgtgccttttttcagttggtaacccacagcgcacttttcctctgtgtccacgc
tgcttcaacgattccaaatggtctttagatgctgatgagctccctcaagatcctacggac
acggaagacgaacagaaagaaaaacagattacttccattgctggaaaacgccttgttttg
gaatgcccattaccggatgaacacccttcgattgaggagttgactgttagtacagatcct
gaaagcgatggtgttttaattcttgacccccacatgggcccgaagtggcgactcgtgtct
actagagacccgatcatcgtttatatgcccaaaggtatcgagaagatcaccgttcttaac
aaaaaagacgaagcattgggagtccaccttatgcaggtcgacttcaaagcgggcgattcc
ccttttcctgacggtgaattaaaatacactagctgttttcccgaagacgaggttttgaaa
gcgagagttagaatttatcacggctcggaccgactgacagcatcaggacgaggtgggcga
ggccgcggcggaaggggcgggcgc
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