Phaeodactylum tricornutum: PHATRDRAFT_8840
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Entry
PHATRDRAFT_8840 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12626
U6 snRNA-associated Sm-like protein LSm7
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03018
RNA degradation
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATRDRAFT_8840
09123 Folding, sorting and degradation
03018 RNA degradation
PHATRDRAFT_8840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATRDRAFT_8840
03041 Spliceosome [BR:
pti03041
]
PHATRDRAFT_8840
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
PHATRDRAFT_8840
mRNA degradation factors
5'-3' decay
Lsm complex
PHATRDRAFT_8840
Spliceosome [BR:
pti03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
PHATRDRAFT_8840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LSM
Motif
Other DBs
NCBI-GeneID:
7196440
NCBI-ProteinID:
XP_002177263
JGI:
8840
UniProt:
B7FPS1
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All DBs
Position
1:complement(1301095..1301463)
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AA seq
93 aa
AA seq
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MLELSKLVDCTVRVKCIGGREIKGILRGYDDLVNLVLDESEEFLRDHENQDRVTKRSRKL
GLCVVRGTQVSLISPEDGVEEIANPFVAHEDAE
NT seq
282 nt
NT seq
+upstream
nt +downstream
nt
atgctggagctcagcaagcttgtggactgcactgttcgcgtgaagtgcattgggggtcgt
gagataaagggtattttgcggggttatgacgatttggtgaacctggtactcgacgagagc
gaggagtttttaagagatcacgaaaatcaagatcgcgttacgaaaaggtcaagaaaactg
ggcttgtgcgttgtcagaggaacacaggtgtctctgatttcaccagaggatggcgttgag
gagattgcaaacccgttcgttgcacacgaggatgccgagtag
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