KEGG   Phaeodactylum tricornutum: PHATR_13520
Entry
PHATR_13520       CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K12883  nuclear cap-binding protein subunit 2
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03013  Nucleocytoplasmic transport
pti03015  mRNA surveillance pathway
pti03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    PHATR_13520
  09122 Translation
   03013 Nucleocytoplasmic transport
    PHATR_13520
   03015 mRNA surveillance pathway
    PHATR_13520
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:pti03019]
    PHATR_13520
   03041 Spliceosome [BR:pti03041]
    PHATR_13520
Messenger RNA biogenesis [BR:pti03019]
 Eukaryotic type
  mRNA processing factors
   5' end processing
    Cap binding complex
     PHATR_13520
Spliceosome [BR:pti03041]
 Common components
  Common spliceosomal components
   Cap binding complex
    PHATR_13520
SSDB
Motif
Pfam: RRM_1 Nup35_RRM_2
Other DBs
NCBI-GeneID: 7204590
NCBI-ProteinID: XP_002185638
JGI: 13520
UniProt: B5Y3E5
LinkDB
Position
11:141257..141637
AA seq 127 aa
YWDRSHYKSPAQQMEALAKSSTLYIGNLAFSTRSRHVRAHFAQIGPVRSVQMGLDRLKKT
PCGFCFVEYHYRTDALAAVANLSGTKLDGRVIRVELDAGFQPGRQYGRGLSGGQVRDDRR
TAADPAR
NT seq 381 nt   +upstreamnt  +downstreamnt
tactgggatcggtcgcactataagtctcccgcgcaacagatggaagccttggcgaagagt
tcgacgctctacattggtaatttggcgttttcgacccgcagtcgtcacgttcgtgcacac
tttgcacaaattggacccgtccgtagcgtgcaaatgggattggatcgtctcaagaaaaca
ccttgtggtttctgtttcgtggagtaccattaccggaccgatgcgctcgcagcagttgcg
aatttgagtgggaccaagctggatggccgcgtgattcgggtcgaactcgatgccggattt
caaccgggtcgccagtacggacgtggtctgagcggaggacaagtccgtgacgatcgacgt
accgcggcagatccagcgagg

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