Phaeodactylum tricornutum: PHATR_13520
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Entry
PHATR_13520 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12883
nuclear cap-binding protein subunit 2
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03013
Nucleocytoplasmic transport
pti03015
mRNA surveillance pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATR_13520
09122 Translation
03013 Nucleocytoplasmic transport
PHATR_13520
03015 mRNA surveillance pathway
PHATR_13520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATR_13520
03041 Spliceosome [BR:
pti03041
]
PHATR_13520
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA processing factors
5' end processing
Cap binding complex
PHATR_13520
Spliceosome [BR:
pti03041
]
Common components
Common spliceosomal components
Cap binding complex
PHATR_13520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
Nup35_RRM_2
Motif
Other DBs
NCBI-GeneID:
7204590
NCBI-ProteinID:
XP_002185638
JGI:
13520
UniProt:
B5Y3E5
LinkDB
All DBs
Position
11:141257..141637
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AA seq
127 aa
AA seq
DB search
YWDRSHYKSPAQQMEALAKSSTLYIGNLAFSTRSRHVRAHFAQIGPVRSVQMGLDRLKKT
PCGFCFVEYHYRTDALAAVANLSGTKLDGRVIRVELDAGFQPGRQYGRGLSGGQVRDDRR
TAADPAR
NT seq
381 nt
NT seq
+upstream
nt +downstream
nt
tactgggatcggtcgcactataagtctcccgcgcaacagatggaagccttggcgaagagt
tcgacgctctacattggtaatttggcgttttcgacccgcagtcgtcacgttcgtgcacac
tttgcacaaattggacccgtccgtagcgtgcaaatgggattggatcgtctcaagaaaaca
ccttgtggtttctgtttcgtggagtaccattaccggaccgatgcgctcgcagcagttgcg
aatttgagtgggaccaagctggatggccgcgtgattcgggtcgaactcgatgccggattt
caaccgggtcgccagtacggacgtggtctgagcggaggacaagtccgtgacgatcgacgt
accgcggcagatccagcgagg
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