Phaeodactylum tricornutum: PHATR_1682
Help
Entry
PHATR_1682 CDS
T01075
Name
(RefSeq) anthranilate synthase. anthranilate synthetase. chorismate lyase
KO
K14553
U3 small nucleolar RNA-associated protein 18
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
PHATR_1682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
pti03009
]
PHATR_1682
Ribosome biogenesis [BR:
pti03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
PHATR_1682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_EML_2
WD40_Prp19
WD40
WD40_WDHD1_1st
WD40_CDC20-Fz
WDR55
ANAPC4_WD40
Beta-prop_WDR19_1st
PD40
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Cytochrom_D1
NBCH_WD40
Beta-prop_TEP1_2nd
EIF3I
WD40_RFWD3
Beta-prop_WDR35_TULP_N
WD40_like
Beta-prop_HPS5
Beta-prop_CAF1B_HIR1
Beta-prop_NOL10_N
Beta-prop_DCAF4
Beta-prop_EIPR1
Beta-prop_VPS8
Beta-prop_Vps41
B-prop_COPA_B_2nd
Beta-prop_SPT8
Motif
Other DBs
NCBI-GeneID:
7204526
NCBI-ProteinID:
XP_002185694
JGI:
1682
UniProt:
B5Y3P6
LinkDB
All DBs
Position
11:384775..386170
Genome browser
AA seq
437 aa
AA seq
DB search
RPDEPAWVDEDDVGLEVNLLATSRLRKLRKSKAEVAALALCGTDLEERLRQRYQRTTQAT
ARTDWARLSDSSTLIDKDAGNNDEDSDSDFKSLSTSLLLHSTSTRRLPPNTLNLVRCPDA
NQSDPNQSVLQAVHFHPASDADQPLLLTAGLDKTLRFFQVGVDKSEKVHGIHFPKLPIYS
ASFLGSSGNVVVSGRRSFFYIYDTVAGKLELIPKILGREERSLEKCFPSPDGRTIAFVGN
DGYIILFDAHAKQWIADLKISGSVRAITFTPDGEYILASGSDGEIYRWDLRTRRCVERFT
NQDGTITSYLAASSRHLAVGAESGVVNMFSEHSMGYRAVGHVVVSERNPMKSILNLHTSA
DMVRFNGDGQILAFSSRREKNSMKLLHVPSATVFSNWPTSKTPLGFVWSMDFSPESKYLA
VGNDKGKCLLYRLMHYQ
NT seq
1311 nt
NT seq
+upstream
nt +downstream
nt
agacccgatgagccagcgtgggtcgacgaagacgatgttggattggaagtaaatttgctc
gcaacgagccgattacgaaagttaaggaaaagtaaagcagaagtagctgctcttgccctt
tgcggtaccgaccttgaggagcgtttaaggcagcgatatcaacggacaacccaagcgacg
gctcgtacagactgggctcgtttaagtgatagttcgactttgattgacaaagacgccggc
aataacgacgaggactcggactcggacttcaagtcgttatcgacttctctgttgctccac
tcgacctcgactagacgcctccctccgaacactttaaatcttgtgcgttgccctgacgca
aatcaatccgacccaaatcaatcagttctccaggcggtacatttccaccctgcatctgat
gctgaccaaccactccttttaactgcgggtctcgacaaaacgctccgattttttcaagtg
ggagtagacaaaagtgaaaaagtgcatggaattcatttccctaaactcccgatttatagt
gcttcttttttgggatcgtcaggtaatgttgtcgtgagtgggcgacggtcgtttttctat
atttacgacactgtcgcaggaaagctggaactcattcccaaaattttaggaagggaagag
cgaagcttggaaaaatgctttccctctcccgatggtcgtactattgcctttgttggaaat
gatggatacattattttgtttgatgcacacgctaagcaatggattgctgatttgaagatt
agcggtagcgtcagagcaattacgtttactcctgatggtgagtacattctagccagtgga
agtgacggagagatctatcgatgggatcttcgaacgcgtcgatgtgttgaacgattcaca
aaccaagatgggacgatcacatcttatctggcagcttcctcccgtcatctagctgtggga
gctgaaagtggtgttgtgaacatgttttcggagcacagcatgggatacagagcggtcggc
catgtcgtggtgtctgaacgcaatccaatgaagtccatattgaacctccacacgtcggct
gatatggtgcggttcaacggcgatggacaaattctagcattttcgtctcgccgtgaaaaa
aatagcatgaagttgcttcatgtaccgagcgccactgtcttctcaaactggcccacctct
aagactccattaggtttcgtttggtcaatggacttttccccagaaagcaaataccttgcc
gtgggcaatgacaaaggaaagtgcctcttataccgtctcatgcactatcaa
DBGET
integrated database retrieval system
