Phaeodactylum tricornutum: PHATR_33540
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Entry
PHATR_33540 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K12877
protein mago nashi
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03013
Nucleocytoplasmic transport
pti03015
mRNA surveillance pathway
pti03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
PHATR_33540
09122 Translation
03013 Nucleocytoplasmic transport
PHATR_33540
03015 mRNA surveillance pathway
PHATR_33540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
pti03019
]
PHATR_33540
03041 Spliceosome [BR:
pti03041
]
PHATR_33540
Messenger RNA biogenesis [BR:
pti03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
PHATR_33540
Spliceosome [BR:
pti03041
]
Complex C
Other components
EJC/TREX
PHATR_33540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Mago_nashi
Motif
Other DBs
NCBI-GeneID:
7203910
NCBI-ProteinID:
XP_002186487
JGI:
33540
UniProt:
B5Y5K5
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All DBs
Position
3:complement(1190042..1190509)
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AA seq
155 aa
AA seq
DB search
MTDPSPNDDFYLRYYVGHEGKFGREFLEFELYPSGKLRYANNSNYKDDDLIRKEVYVSPA
VVEEFRRLVEVSEITKVDDSKWKEPDERSTGHQELECKIGSHHIAFTACEIRSLGDIQKW
NDPEGLQTFYYLTLDLKALVMALISSHFKARPIPD
NT seq
468 nt
NT seq
+upstream
nt +downstream
nt
atgacagacccaagtcccaacgacgatttttacctccgatactacgtcggccacgagggc
aaattcggcagagaattcctcgagtttgaactctacccgtcgggaaagcttcgatacgcg
aacaactccaattacaaggacgacgatctgattcggaaagaagtctacgttagccccgcg
gtagttgaggaatttcgacgcctagtggaagtcagcgagattaccaaagtggacgatagc
aagtggaaagaacccgacgaaagatccaccggccatcaagagctagaatgcaaaatcgga
tcccatcatatcgcgttcacggcatgtgagattagatcgctgggtgatattcaaaaatgg
aacgatccagagggactccagacgttttactatcttacactcgatctcaaagccctggtg
atggcactcatttcgtcgcatttcaaagcgaggccgatcccggattga
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integrated database retrieval system