Phaeodactylum tricornutum: PHATR_3578
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Entry
PHATR_3578 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K06173
tRNA pseudouridine38-40 synthase [EC:
5.4.99.12
]
Organism
pti
Phaeodactylum tricornutum
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
pti03016
]
PHATR_3578
Enzymes [BR:
pti01000
]
5. Isomerases
5.4 Intramolecular transferases
5.4.99 Transferring other groups
5.4.99.12 tRNA pseudouridine38-40 synthase
PHATR_3578
Transfer RNA biogenesis [BR:
pti03016
]
Eukaryotic type
tRNA modification factors
Psudouridine synthases
PHATR_3578
Prokaryotic type
PHATR_3578
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PseudoU_synth_1
DUF2344
Motif
Other DBs
NCBI-GeneID:
7204588
NCBI-ProteinID:
XP_002185636
JGI:
3578
UniProt:
B5Y3E2
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All DBs
Position
11:<132784..>133662
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AA seq
293 aa
AA seq
DB search
FLLAYVGTNYGGFQINDGQRTPQAEFELAMLRTRLLLPCNFGSPHKYSWSTSGRTDKGVH
ACAQVVSAKVELLPDQTMAEVRDEMNTVLPDDVRVLDVVRTTRNFCAKTQRDRVRYQYMI
PSFVFADADTLRVLFKDVVGHSNRGQSKAELLLPEELKSIQSALKDFRANPMHIAKLQEA
LQVYEGTHAFHNFSRGVKANEARAARYIERFHVEEPIVFPNGVEWIPTQVLGQSFLLNQI
RKMVCMAMDVARGVVPLTNVSRALERQSDVRINVAPAQGLFLEMSYYGGYNRR
NT seq
879 nt
NT seq
+upstream
nt +downstream
nt
tttttgctggcctacgttggcactaactacggcgggtttcaaatcaatgatggccagcgt
acaccccaagcagaattcgagcttgctatgcttcgaactcggcttcttctgccctgcaac
tttggaagtccgcacaaatacagctggagtacatctgggcgaacggacaagggtgttcac
gcttgcgcgcaagttgtatcggccaaggttgaactcttgccagatcagacaatggcagaa
gtgcgagacgaaatgaacaccgtgctaccggatgatgttcgtgtcttggatgtcgtccgc
actacgcgcaacttctgcgccaaaacccaacgtgaccgtgtccgctatcagtatatgatc
ccttcatttgtctttgccgatgccgacacgcttcgagttcttttcaaggacgtagtaggg
cattctaacagagggcaaagcaaagccgagctactgctccctgaagaattaaaatcaata
cagtctgcattgaaagattttagggcaaatcctatgcatattgcaaagctgcaagaggcg
cttcaagtctacgaaggcacacatgcctttcacaacttttcccgtggtgttaaagcaaac
gaggcccgtgcggctcgttacatcgagaggtttcacgtagaagaacccattgtctttccg
aacggagtggaatggattccaacacaagtcctcggccaatcttttctcctaaaccaaatc
cgcaaaatggtgtgtatggcaatggatgtggcgcgaggcgtggtcccattgaccaatgta
tcacgagcacttgagcgacagtccgacgttcgaatcaatgtggcaccggcgcaaggatta
tttttagaaatgagctattacggaggctataaccgacgt
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