Phaeodactylum tricornutum: PHATR_43960
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Entry
PHATR_43960 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K03141
transcription initiation factor TFIIH subunit 1
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03022
Basal transcription factors
pti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHATR_43960
09124 Replication and repair
03420 Nucleotide excision repair
PHATR_43960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATR_43960
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATR_43960
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHATR_43960
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHATR_43960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BSD
PH_TFIIH
Motif
Other DBs
NCBI-GeneID:
7204182
NCBI-ProteinID:
XP_002186081
JGI:
43960
UniProt:
B5Y4W9
LinkDB
All DBs
Position
3:550443..552476
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AA seq
641 aa
AA seq
DB search
MTMREAMDVDSVETSYTPVRYKKQSGSLQLSTSSLTFLGEGSSKVVKWMHIAKHQVSPAS
YPKPLLKIVLSSGTNLTFQLPDRSALDQIRLDVTRRLQFRSSLSSSSPAGGSRKRPLTDL
SQTSTFGDLDPTALAVTRSALLAAHPSLRQQHQQLVQESETLSEEDFWLTHKDLLEEEYA
RISGLAKAGTSSLLQSHLPTAGKVTLGVEEMRQIFILYPAVHKAYEEKVPLELSDEQFWR
KYLESEYFHRDRGRMGTAAQNHSAIETKTAKSKDGVKGLSMEQQDARAAAVGTDDLFSRY
DQKLSQENGENHETSHRRWGRQLAVGQFDLASTFETERGKVLEQANRDNHPPNIADDGRG
TRVIQKYNRHWAMVLHPEDAIAGSDLMQVARKSVRDVLPGDDDAAAGGGFDQETRRLVKY
AEASTEAANHASCLGEDEGAYEPLTLSNVEAYYSGQLRNGHTAENDEEATKRHIVLARMV
SQKVGKLVDSLEKNFDLPESCFPPPSLGRELLSALTRKMAQDSRTEAASLEMVNKLPEDF
RKRLHSHFRRSSELLRHFFGLRRMEAANAGNGQKLSRIVLAMESFYREMESMRRELPQTE
TGEMMRKMCLPIMDQLDWAFKLHREGSGGGVGGGFVAVEEI
NT seq
1926 nt
NT seq
+upstream
nt +downstream
nt
atgacgatgagggaggccatggatgtggattcagtcgaaacctcgtatactcccgtccgc
tataagaaacaaagtgggtcgctacagttgtcgacgtccagtttgacgtttctcggcgag
ggctcctcgaaagtagtaaaatggatgcacattgcgaaacatcaagtcagcccggcatcg
tatccgaagcctttactaaaaattgtcttgtcttcgggaaccaatttgacttttcaatta
ccggatcggagcgcgctggatcagattcgcttggacgtgacgcggcgtctccagtttcgg
tcgtctttgtcgtcgtcgtcgcctgcgggcggcagccgcaagcgcccactgaccgacctg
tcgcagacgtccacctttggagatttggatcccaccgcactcgctgtgactcgatccgcg
ctgttggcggcgcatcccagtctacgacaacagcaccagcaactcgtgcaagaatccgaa
actctgtcggaagaagacttttggctcacccacaaggacttgttggaagaagaatacgca
cgaatctcagggctcgctaaagccggcacttccagtttactacaatctcacctgcctacc
gctggcaaggtgacgctgggggtggaagaaatgcggcagatttttattctctatcccgcc
gtccacaaggcgtacgaagaaaaggtacccttggagctatccgacgaacaattctggcgc
aagtatctggaatcggaatactttcatcgggatcgaggacgcatgggaacggctgcgcag
aatcactcggctatcgaaaccaaaactgcgaaaagtaaggatggcgtcaagggactgtct
atggaacaacaagatgcgcgggctgcggcggttggaaccgacgatttatttagtcgatat
gatcaaaagctatcgcaagagaatggagaaaatcacgaaacttctcaccgtcgatggggt
cgccaattggctgttggccagttcgatttggcgtctacatttgaaacggaacgcggtaag
gtcttggaacaagccaaccgggacaatcacccacccaatattgccgacgacggcagaggt
acacgagtcattcaaaagtacaaccgtcactgggccatggtgctgcatccggaggacgcc
atagccggatcagacttgatgcaagtagcacggaaaagcgtgcgggatgtgttacctggt
gacgacgacgcagcagccggaggaggttttgatcaggaaacacgtcgactcgtaaagtac
gcggaagcatcgacggaagcggcgaatcatgcgtcttgtctcggggaagacgaaggcgca
tatgagcctctgacactgtcgaatgtggaggcatactactcgggtcaattgagaaacgga
cacacagcggaaaacgacgaggaggcgacaaagcgacacatagtgttagcacgcatggtg
tctcaaaaggtcggtaagctagttgattcactggaaaagaattttgatttacctgaatca
tgctttccgccaccttcgcttggtcgggaattgttgtcggctttgacgagaaagatggcg
caggattctcggaccgaggctgcttccctcgaaatggtaaacaagctcccggaagacttc
cggaagcgtctccattcgcactttcgtcggtcgtcggaactgctacgacatttttttgga
ctgcggcgcatggaagcggccaatgcagggaacgggcagaaactgtcgcggattgttttg
gctatggaaagcttttaccgcgaaatggagtcaatgcgacgagagcttccccagacggaa
acgggcgagatgatgcgaaaaatgtgcctccccattatggaccaattagattgggcattt
aagttgcatcgtgaaggcagcggtgggggagttggtggcggtttcgtggcggttgaggaa
atttga
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integrated database retrieval system
