Phaeodactylum tricornutum: PHATR_43994
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Entry
PHATR_43994 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K10754
replication factor C subunit 1
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03030
DNA replication
pti03410
Base excision repair
pti03420
Nucleotide excision repair
pti03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHATR_43994
03410 Base excision repair
PHATR_43994
03420 Nucleotide excision repair
PHATR_43994
03430 Mismatch repair
PHATR_43994
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pti03032
]
PHATR_43994
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATR_43994
DNA replication proteins [BR:
pti03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
PHATR_43994
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
PHATR_43994
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
AAA_assoc_2
PTCB-BRCT
RCF1-5-like_lid
DUF7790
Sigma54_activ_2
Motif
Other DBs
NCBI-GeneID:
7204400
NCBI-ProteinID:
XP_002186388
JGI:
43994
UniProt:
B5Y507
LinkDB
All DBs
Position
3:complement(641490..644482)
Genome browser
AA seq
942 aa
AA seq
DB search
MPMDIRQFFKGGGSSKKNTVKPVSNLMDQVKLVNSGSKKRKESPVHEEESTNTFLESTGN
VPIQEREKEPSGRRRSPRKLSKNSPANVVRAEIGFVDGTKEKPIASPNKALDMSLSKKSS
KLATSPQKKPSGVVSIANSLPPTAAIGNRNVPSDFSPSPQTRKSPPTSTVSNTKRLKRDP
PLEPKLTQSSFNVDKAAPECLRGCTFVFSGVLPNLSREDGQEMVKTLGGRITGAVSSLTN
YLVVGEELEDGRVYTEGSKYKRAVQEGTHIVQGEEAFYGLLQQYNDKEIAAGNALLNTAP
KLSQSEAPLAANPYAKKAPNNPYAKPALSNPYVKAKPYTSGKPSPAEISSPVDIKADRSS
GANLLWVDKYKPTRSGEILGNAESVKKLGLWLSSWEQKFNNSKAVGKGVANPNDRFKAAL
LSGPPGIGTTIVAKESGRDVIEFNASDVRSKKAIKDDMGDITGSYTLEFGKPAINEKRQS
SRIKRCIIMDEVDGMGAGDRSGMSELIQMIKKSRVPIICICNDRQSQKMKSLLPYCMDLR
YRRPTKSVIANRAVRIAAQEGFTVEQNAAEAIAESCGNDVRQVLNCMQMWASDSSSESRM
TYKDLKQRESSINKDEILRVSLFDAARNILEGRRGLQGADASTERQHFFRRNDAFFVDYN
FVGLLVQQNYIKVMQGQFNDAKRSNDQSNILGVLERMSQASDAMSDFAEAENGLRGGQNW
SLLPFCAMLAVKTGFHAGGPNGGGLPGFPDFTSWLGRNSSKGKKARLLHELQHHMNYKIS
GGAQEMRLSYLPVLRDRFLSLLLGREEGLTEKAIDLMDEYGLDRDDVFEKLDEFRMDHKA
DTFAKLDSKKKAAFTRFYNQGTHRSQALVAEQGGSKTVKRGANAVAEETIDPDAIDDDVA
KAEENEGDDADEDMEKIKAMFKKKGRNTTQKAATKGKAKKKK
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgccgatggatattcgtcaatttttcaaaggcggaggatccagcaaaaaaaacaccgta
aagccggtatccaatttgatggatcaggtcaaactggtgaactctggctccaaaaagcgc
aaagaatcccccgtacacgaggaagaatccacaaatacttttcttgaatccactggaaat
gttcctattcaggaacgagagaaagagccatcaggtcgtaggagatcgccccgtaagctg
tcgaaaaatagtccggcaaacgtagtgcgagccgagattggatttgtcgacggaacgaaa
gaaaagccgatcgctagtcccaacaaagctctggatatgagtttatcgaaaaaatcttcc
aaattagcaacgtcaccccaaaaaaaaccgtcgggagttgtcagcattgccaactctctt
cccccgaccgccgctatcgggaatcgcaatgtcccttccgatttcagcccctcgccgcag
acccgcaaatctccacccacgagtactgtgagcaacacgaaacgcctaaagcgtgatccg
cctctggagcccaagctaacacaatcatcgttcaatgtcgacaaggctgctccagaatgt
ttgagaggctgcacgtttgtcttttccggtgtcttaccgaacctcagtcgcgaggacggc
caggaaatggtcaaaacacttggcggacggatcactggagctgtatcaagtttgacaaat
tatcttgttgttggcgaagagttggaagatggacgtgtctacacagagggcagcaagtac
aaacgtgcggtccaagaaggtacgcacattgttcagggcgaggaggccttttacgggttg
ctacagcagtacaatgacaaggaaatcgcagcaggaaatgctttattgaacacagctccc
aaactgagccaatcggaagcacctcttgctgcgaatccgtatgccaagaaggcgccaaat
aatccttacgccaaacctgccctttcaaatccttacgttaaggcaaaaccatacacttct
ggcaagccttcgcctgcagaaattagctcaccagtcgacatcaaagcagatcgctcttcc
ggtgctaaccttctttgggtggacaagtacaaaccgactcgctcgggggaaattttggga
aatgccgagtcggtgaagaagcttggcctttggctgtcatcttgggaacagaagtttaac
aactccaaagctgttggaaaaggtgttgctaatccaaacgatcgcttcaaggccgcactt
ttgtctgggccacctggcattggtacaactattgttgcaaaagaatcaggtcgcgatgtg
attgaattcaatgcttccgacgtgcgatccaagaaagcgatcaaagacgacatgggtgat
atcactggttcatacacactcgagtttggcaaacccgccatcaatgaaaagcgccaaagt
agtcggattaagcgttgtataattatggacgaagttgatggcatgggtgctggggatcgc
agtgggatgtcagaacttattcaaatgattaaaaagagccgagttccgattatctgcatt
tgtaacgatcggcagtcccaaaagatgaaaagcctgcttccctactgtatggatcttagg
taccggcgaccgacaaaatctgtaatcgcgaatcgcgctgtaagaattgcggcacaagaa
ggatttaccgtcgaacaaaacgcagctgaagcgattgctgagtcatgcggaaacgacgtt
cggcaggttttgaattgcatgcaaatgtgggccagtgacagcagtagtgaatcgcgcatg
acttacaaggatttgaaacaacgcgagagctccattaacaaagacgagatcctccgcgtc
agtcttttcgatgcagcgcgaaatattttggaaggtcgtcgagggctacaaggagctgat
gcatcgaccgagcgacagcactttttcagaagaaacgatgccttcttcgtagactacaac
tttgttggtctgttggtacagcagaactacatcaaagtgatgcaaggtcagttcaatgat
gcaaaacgttcaaatgaccagtccaatattttaggtgttttggagcgaatgagccaggcc
tcggatgccatgtccgattttgctgaggccgagaacggactgaggggaggccagaactgg
agccttttgcccttttgtgcaatgctagcggtaaaaactggcttccatgctggtggtccc
aatgggggcggtcttcctggcttcccagactttacttcttggcttggacgaaattctagc
aaaggcaagaaagctcgtctgttacacgaactacagcatcacatgaattataagattagt
ggtggagctcaagaaatgcgtttatcctacctaccagttttacgtgaccggttcttgtcg
ctcctactgggcagagaagaaggactcactgaaaaagccattgacctcatggatgaatat
ggcctggaccgagacgacgtcttcgaaaagcttgatgagtttcgaatggatcacaaggcg
gacaccttcgctaagctggatagcaagaaaaaggccgccttcacaaggttttataatcaa
ggtactcatagaagccaagcactagtggctgaacaaggcggtagcaagacggttaagcgt
ggtgctaacgcggttgcggaggaaacgattgatccagatgccatcgacgatgatgtcgca
aaggctgaagaaaatgaaggtgatgatgcggacgaggacatggaaaagattaaagccatg
ttcaaaaagaaagggcgaaacacgacgcagaaagctgctaccaagggtaaagccaagaaa
aagaaatag
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