Phaeodactylum tricornutum: PHATR_44108
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Entry
PHATR_44108 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K03143
transcription initiation factor TFIIH subunit 3
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03022
Basal transcription factors
pti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
PHATR_44108
09124 Replication and repair
03420 Nucleotide excision repair
PHATR_44108
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
pti03021
]
PHATR_44108
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATR_44108
Transcription machinery [BR:
pti03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
PHATR_44108
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
PHATR_44108
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Tfb4
Zn_ribbon_NOB1
Zn_ribbon_15
zf-C3HC4_3
Zn_ribbon_6
zf-UDP
Motif
Other DBs
NCBI-GeneID:
7203869
NCBI-ProteinID:
XP_002186446
JGI:
44108
UniProt:
B5Y5D3
LinkDB
All DBs
Position
3:complement(1005776..1006930)
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AA seq
358 aa
AA seq
DB search
MVKNKRNTDANSLLILVLDVSPLAWGERDIQRTAQDKSRVALGKRSVGPAVLEEALEATE
AFASAFCSIEHDAGLVLIAVADNETAVVYPRSNDISEWMLHPETYLPDIRKMKEHLTVGV
HELLLRAASKAQYLSDASSRQAAMAAAFSNALCIINRFLVAARVGGVSALRNETHLNRND
DQGVIALMDGKAKSKPASKKLSGWSPRIFLIQASDDRSRDYNAFMNCAFAAVKQSIVVDG
CFLSAKGNHSSSAFLEQACDLTGGVFLSPSGTAQVGGALTEVLHSVFLADVPSRCLLNLP
AINKVDFRARCFETAELVDLAYVCNQCLSIFRKQPKNYCPTCQAKIVVDSKRVGTTEI
NT seq
1077 nt
NT seq
+upstream
nt +downstream
nt
atggtcaaaaataaaaggaatactgacgccaactctcttctaatcctggtgctagacgta
tcaccactagcgtggggcgaacgcgacattcagcgaacagctcaggataaatcgagggtc
gcactagggaaacgcagtgttggacccgctgttctcgaggaagctttggaagcgaccgag
gcctttgccagtgccttttgcagcatcgaacacgacgccggcttggtccttattgcggtg
gccgacaatgagacagccgttgtatatccgcgatcaaacgatatttccgaatggatgctc
catccggaaacatatctgccagacatacgcaaaatgaaagaacatttaacagttggagtg
cacgaattgctgcttcgagcggcttccaaagcgcagtacctttcggatgcctcttcccgc
caagccgccatggcagcagcgttctccaatgccctatgtataatcaatcgatttttagta
gccgctcgagtgggtggagtcagtgcgttgcggaatgaaacacatttgaaccgcaacgat
gatcagggagtgatagcactaatggatggcaaggccaaatcgaaaccagcgagtaaaaag
ttgtccggttggtcgccccgaattttcctcatacaggcctcggatgatcgatcaagagac
tacaatgccttcatgaactgcgcgtttgcagctgttaaacagagcatagttgtggatggg
tgttttctctcggcaaaaggaaatcactcgtcgtcggcatttttggagcaggcatgtgac
ttaacgggtggcgtctttttgagtccatctggaacagctcaagtcggaggggcactaaca
gaagttctacacagcgtatttttggcggatgtgccttctcgatgccttttaaatctaccg
gcaattaacaaggtcgatttccgtgcccgatgttttgagactgcagaacttgttgacttg
gcatacgtttgtaatcaatgtttgtccatttttcgaaagcaaccaaaaaactactgcccg
acttgccaggctaaaatcgtggtcgactcaaagcgggttggaacaactgaaatttga
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