KEGG   Phaeodactylum tricornutum: PHATR_44108
Entry
PHATR_44108       CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K03143  transcription initiation factor TFIIH subunit 3
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03022  Basal transcription factors
pti03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    PHATR_44108
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHATR_44108
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATR_44108
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATR_44108
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     PHATR_44108
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     PHATR_44108
SSDB
Motif
Pfam: Tfb4 Zn_ribbon_NOB1 Zn_ribbon_15 zf-C3HC4_3 Zn_ribbon_6 zf-UDP
Other DBs
NCBI-GeneID: 7203869
NCBI-ProteinID: XP_002186446
JGI: 44108
UniProt: B5Y5D3
LinkDB
Position
3:complement(1005776..1006930)
AA seq 358 aa
MVKNKRNTDANSLLILVLDVSPLAWGERDIQRTAQDKSRVALGKRSVGPAVLEEALEATE
AFASAFCSIEHDAGLVLIAVADNETAVVYPRSNDISEWMLHPETYLPDIRKMKEHLTVGV
HELLLRAASKAQYLSDASSRQAAMAAAFSNALCIINRFLVAARVGGVSALRNETHLNRND
DQGVIALMDGKAKSKPASKKLSGWSPRIFLIQASDDRSRDYNAFMNCAFAAVKQSIVVDG
CFLSAKGNHSSSAFLEQACDLTGGVFLSPSGTAQVGGALTEVLHSVFLADVPSRCLLNLP
AINKVDFRARCFETAELVDLAYVCNQCLSIFRKQPKNYCPTCQAKIVVDSKRVGTTEI
NT seq 1077 nt   +upstreamnt  +downstreamnt
atggtcaaaaataaaaggaatactgacgccaactctcttctaatcctggtgctagacgta
tcaccactagcgtggggcgaacgcgacattcagcgaacagctcaggataaatcgagggtc
gcactagggaaacgcagtgttggacccgctgttctcgaggaagctttggaagcgaccgag
gcctttgccagtgccttttgcagcatcgaacacgacgccggcttggtccttattgcggtg
gccgacaatgagacagccgttgtatatccgcgatcaaacgatatttccgaatggatgctc
catccggaaacatatctgccagacatacgcaaaatgaaagaacatttaacagttggagtg
cacgaattgctgcttcgagcggcttccaaagcgcagtacctttcggatgcctcttcccgc
caagccgccatggcagcagcgttctccaatgccctatgtataatcaatcgatttttagta
gccgctcgagtgggtggagtcagtgcgttgcggaatgaaacacatttgaaccgcaacgat
gatcagggagtgatagcactaatggatggcaaggccaaatcgaaaccagcgagtaaaaag
ttgtccggttggtcgccccgaattttcctcatacaggcctcggatgatcgatcaagagac
tacaatgccttcatgaactgcgcgtttgcagctgttaaacagagcatagttgtggatggg
tgttttctctcggcaaaaggaaatcactcgtcgtcggcatttttggagcaggcatgtgac
ttaacgggtggcgtctttttgagtccatctggaacagctcaagtcggaggggcactaaca
gaagttctacacagcgtatttttggcggatgtgccttctcgatgccttttaaatctaccg
gcaattaacaaggtcgatttccgtgcccgatgttttgagactgcagaacttgttgacttg
gcatacgtttgtaatcaatgtttgtccatttttcgaaagcaaccaaaaaactactgcccg
acttgccaggctaaaatcgtggtcgactcaaagcgggttggaacaactgaaatttga

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