KEGG   Phaeodactylum tricornutum: PHATR_46699
Entry
PHATR_46699       CDS       T01075                                 
Name
(RefSeq) hypothetical protein
  KO
K03012  DNA-directed RNA polymerase II subunit RPB4
Organism
pti  Phaeodactylum tricornutum
Pathway
pti03020  RNA polymerase
pti03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:pti00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    PHATR_46699
  09124 Replication and repair
   03420 Nucleotide excision repair
    PHATR_46699
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:pti03021]
    PHATR_46699
   03400 DNA repair and recombination proteins [BR:pti03400]
    PHATR_46699
Transcription machinery [BR:pti03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol II specific subunits
     PHATR_46699
DNA repair and recombination proteins [BR:pti03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      PHATR_46699
SSDB
Motif
Pfam: RNA_pol_Rpb4 Int_EF-hand
Other DBs
NCBI-GeneID: 7204613
NCBI-ProteinID: XP_002185843
JGI: 46699
UniProt: B5Y3I1
LinkDB
Position
11:complement(228657..229301)
AA seq 162 aa
MVEISAIGDSNAAAPVENVAELQFGPEFEDIHILSNAQVAVILQVSANSAVNRDEELNEV
YRKTQKYVNRFNTMTNPEKEHQELVDELDNLQDALSTFRKETDDGDELELHGAEVAALMN
LVATDTLVEEAVALIPSLSRFPEAAIDEILDLIRSTMIRIVS
NT seq 489 nt   +upstreamnt  +downstreamnt
atggtcgaaatctctgctataggggattctaatgctgcggcgccggtcgaaaacgttgcg
gagttgcagtttgggcccgagttcgaagacattcatatcctctccaacgctcaggttgct
gttattctgcaagtgagtgccaactccgccgtcaatcgtgatgaagagctcaacgaagtt
taccgaaaaacacagaaatacgtgaatcgattcaacacaatgaccaatccagaaaaggaa
caccaagagctcgttgatgaacttgacaacctgcaagacgccttatctacgtttcgcaaa
gagacagacgatggcgacgagctcgagctgcacggtgctgaagtcgctgcactcatgaat
ctagtggcaaccgataccctggttgaagaagctgtggcgttgattccgtctttgtctcga
tttcccgaagctgccatcgatgagattttggacttgatccgcagcacaatgatccggatt
gtttcgtaa

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