Phaeodactylum tricornutum: PHATR_46719
Help
Entry
PHATR_46719 CDS
T01075
Name
(RefSeq) hypothetical protein
KO
K03504
DNA polymerase delta subunit 3
Organism
pti
Phaeodactylum tricornutum
Pathway
pti03030
DNA replication
pti03410
Base excision repair
pti03420
Nucleotide excision repair
pti03430
Mismatch repair
pti03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
pti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PHATR_46719
03410 Base excision repair
PHATR_46719
03420 Nucleotide excision repair
PHATR_46719
03430 Mismatch repair
PHATR_46719
03440 Homologous recombination
PHATR_46719
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
pti01009
]
PHATR_46719
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
pti03032
]
PHATR_46719
03400 DNA repair and recombination proteins [BR:
pti03400
]
PHATR_46719
Protein phosphatases and associated proteins [BR:
pti01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
PHATR_46719
DNA replication proteins [BR:
pti03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase delta complex
PHATR_46719
DNA repair and recombination proteins [BR:
pti03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase delta complex
PHATR_46719
MMR (mismatch excision repair)
DNA polymerase delta complex
PHATR_46719
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CDC27
Motif
Other DBs
NCBI-GeneID:
7204504
NCBI-ProteinID:
XP_002185674
JGI:
46719
UniProt:
B5Y3K4
LinkDB
All DBs
Position
11:273342..275133
Genome browser
AA seq
504 aa
AA seq
DB search
MSVYDACPAERALAFPPDFGAPTRPPSLVVTTMTPSRVIPLSKTLCCPDHTAVLSVSSVT
DEQVREVASLIHDELQCVSIGGVAQTLGLSRTLASQLLTKVAQDEASVHDDGSTRVEPRS
YRATYCVSSNETDPTAPDVSCTVFSLVTRHETADAVVRHSVAPRLPEQPLPLLYALSLEN
EALSTAHEREMAAYRDMLQQTRQPDQEHAGAASLERLLQPEALWDDVTPAETVREACYAT
AATASPHQADKHNQLNSRNSSSVTDRGSRRPLPKKAVTAASFFGNQPPGNTRSARTATAT
PPASRTLVSTTKPVKSAAKPNVAALDEKENNRDDLVGNADDFVGDLDDNDDDSVPGDAAP
AVPAEHVPRRPSKRVLIPDSSDDEADTPEESAATGKTTHETLLVDAAPPVKGAMDDFAQK
AAPLPGNLPSRRRRRKVTKEKTTVDPNGFLHTEIQEVWEDIPSDEEETQLVGSPIAKAAP
PAKKTSTVKAGMKQKSLANFFQKK
NT seq
1515 nt
NT seq
+upstream
nt +downstream
nt
atgtccgtctacgacgcctgtcccgccgagcgggctctggcgttcccgcccgatttcggt
gcgccaacccgtcccccgtccctcgtcgtgacgaccatgacgccaagccgcgtaatcccc
ctatcaaagacactttgttgcccagaccacacggcagtgttgtcggtatcgtccgtaacg
gacgaacaagtacgggaggtagcctccctgattcacgacgagctgcagtgtgtgagcatt
ggtggagtcgcgcaaacgttgggtctttcgcgtactctcgcatcgcagttgcttaccaag
gttgcgcaagacgaagcctccgtccatgacgacggtagcacgcgtgtggaaccacggtcc
taccgggcgacgtactgtgtcagtagcaacgagacagaccccaccgctccggatgtctcc
tgtaccgtcttcagtctcgtgacccgccacgaaacggcggatgccgtagttcgccacagc
gtcgcaccgcgactgccggaacaaccgctcccactgctctacgcactctctttggaaaac
gaagccctgtcgacggcacacgaacgagaaatggctgcgtatcgggacatgctccaacag
acacggcaacccgaccaggaacatgccggtgccgcgtcactcgaacgtctcctgcaaccg
gaagcactgtgggacgacgtgactccggccgagacggtgcgggaggcgtgttacgccacc
gcggcaacggccagtccccatcaagcggacaaacacaaccaactcaacagtcgtaacagc
agcagcgtgacggatcgcggcagtcgccgtccgcttcccaaaaaagccgtcaccgccgct
tcgtttttcgggaaccagcctccggggaacactcgtagtgcacgcaccgccacagccacc
ccgccggcatcccggaccctggtgtccaccacaaaaccagtcaagtccgctgcgaaacca
aacgtggcggcgttggacgaaaaggaaaacaaccgggatgaccttgtgggtaacgccgac
gactttgtgggagacttggacgacaatgacgatgacagcgtgccgggagacgccgcaccc
gccgttcccgcggaacacgtaccccgacgtccgtccaagcgggtcctgattccggacagc
agcgacgacgaagccgacactcccgaggaatccgccgccaccgggaagaccacccacgaa
actttgctggtcgatgcagcaccgcccgtcaaaggtgccatggacgactttgcccagaaa
gcggcccccctaccaggcaatctaccgtctcggcgacgccgacgcaaggtcaccaaggaa
aagacgacggtcgatcccaacggatttttgcataccgagatacaggaagtctgggaagat
atcccttcggatgaagaagaaacccaacttgtaggatcgccaattgccaaggccgccccg
cccgccaaaaaaacgtcgacggtcaaagcaggaatgaaacaaaagagtttggccaatttc
tttcagaaaaaatag
DBGET
integrated database retrieval system
