Paenibacillus tianjinensis: JRJ22_00940
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Entry
JRJ22_00940 CDS
T07842
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
ptj
Paenibacillus tianjinensis
Pathway
ptj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRJ22_00940 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptj03019
]
JRJ22_00940 (rnr)
03016 Transfer RNA biogenesis [BR:
ptj03016
]
JRJ22_00940 (rnr)
Enzymes [BR:
ptj01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JRJ22_00940 (rnr)
Messenger RNA biogenesis [BR:
ptj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JRJ22_00940 (rnr)
Transfer RNA biogenesis [BR:
ptj03016
]
Prokaryotic type
tRNA degradation factors
JRJ22_00940 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
OB_RNR_1st
OB_Dis3
S1_RRP5
OB_HELZ2
Motif
Other DBs
NCBI-ProteinID:
QSF47563
UniProt:
A0ABX7LL05
LinkDB
All DBs
Position
188208..191108
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AA seq
966 aa
AA seq
DB search
MITQEILLDYMRETAYKPLTYDELVSHFALEDSASFKAFEDLLVELEQDGRIVLTRNSRY
GVPERMDLLRGRLQAHAKGFAFLIPDDRDHPDVYIHANDLKGAMNGDIVLIRITSKSPSG
GRMEGEVVRIVKRGVLQTVGVFQSLETYGFVLPDDKRINRDIFIPKQSFKGAVDGEKVVV
RIVNYPEGRSAAEGEIIEILGHKDDPGVDILSVIRKHQLPEAFPAEVMAEAEQAPDSITE
EEIIQQGRRDLRGLNIVTIDGADAKDLDDAVNVERLENGHYKLGVHIADVGYYVREGSEL
DKEAYDRGCSVYLVDRVIPMLPHRLSNGICSLNPQVDRLTMSCEMEFNEHMKVVKHDVFT
SVIRTKERMTYANVRKIVEDEDPELLERYSPLIEDFRLMKELAMKLRDARMRRGAVDFDF
EESKIIVDETGKAIDIVKRERSVAEQIIEEFMLAANETVAEHFHWLKVPFLYRIHEDPDP
EKLQNFMAFAANFGYHVKGRGNSVHPRALQDLLEQIQGTKEQTVISTMMLRSMKQAKYDA
ESTGHFGLAAEYYSHFTSPIRRYPDLVIHRVMREVLENGGALTEKRQEYLATRMPDIAQQ
SSERERVAVEAERDTEQLKKCEFMQDKVGEEFEAMISSVTSFGMFIELDNTVEGLIRLSA
LSDDYYHFDEAHMALIGERTSKVFRIGDEVKIRVAKVNMDDHTIDFELVDMKPRAAGEHR
SYGGRGGKGGRPGAGGFGKPSGGKAGSGGKGRGGKGKPGAAGGAGKGKAGGAGNAGKRKG
GAVATGAWETTPRNDAATGGGAPAGAPARGKRGGGPAEAARRAFAALNSEAGGSSAPRER
SGGGRGRGGEAGGGAGGRGISFGFGSGKGGYGAPTGGDAGSGELRGVDANTRFSSREDRG
FESRGSGSEGKNKGRRKKNKGGPFIGASVTPGNVETSDNVSAKRSDNGSNAESAVRRKKK
KKKPQE
NT seq
2901 nt
NT seq
+upstream
nt +downstream
nt
ttgataacacaggaaatattacttgattacatgcgggaaaccgcttataagccgctaact
tacgatgaattggtaagccactttgcattagaggacagcgcttcgtttaaggcgtttgag
gacttgctggtcgagctcgaacaggacggccggattgtattgacccggaacagccgctat
ggcgtaccggagcggatggatttgctgcgtggacgactgcaggcccatgcgaagggtttt
gcttttctgattccagatgaccgcgaccatcccgatgtatacattcatgccaacgatctt
aaaggggctatgaacggagatatcgtcctgatccgaatcacgtccaagagtccgtcaggc
ggccgcatggaaggtgaagtagtgcgcatcgtcaaaagaggcgtactccagaccgtcggt
gtattccaaagcctggagacctacggatttgtgctgcctgatgataagcggattaaccgc
gatatttttatcccgaaacagtcctttaaaggggcggtagacggtgaaaaggttgtcgtc
cgtatcgtaaattacccagaaggccgctctgcggcagaaggcgagattattgaaatactg
gggcataaggatgacccgggcgttgatattttgtcggtcatccgcaagcatcagctgccg
gaagcttttccggctgaagtgatggcagaagcagagcaagcgccggactccattacggaa
gaagagattattcagcagggccgccgtgatctgcgcgggcttaacattgttactatcgac
ggcgcagatgccaaagaccttgatgatgcagtcaatgtcgagcgtctggagaacgggcac
tataagctgggggttcatattgccgacgtgggctattatgtgcgcgaaggctcggagctt
gataaggaagcttatgaccggggatgcagcgtgtacttggtggaccgggtaattccgatg
ctgccgcaccgtctgtcgaacgggatatgcagtcttaatccgcaggtggaccggcttacg
atgtcttgtgagatggaattcaatgagcatatgaaggtcgtgaagcatgatgtctttacg
agtgtgatccgtaccaaggaaagaatgacctatgccaatgtccgcaaaatcgtcgaggat
gaagatccagagctgctggagcgctatagcccgctgattgaggatttccgtctgatgaaa
gagctggcgatgaagctgcgcgatgcgcggatgcggcgcggggcggtagactttgacttt
gaagagagcaagattatcgtcgatgaaaccggcaaggcgatcgatattgtaaaacgcgag
cgctccgtggctgaacagatcatcgaggaattcatgctggcggccaacgagacggtggct
gagcatttccactggcttaaggttccgttcctgtaccggattcatgaagatccggatccg
gagaagctacagaacttcatggcgtttgccgcgaactttggctatcatgtcaaaggccgg
ggcaactcggttcatccgcgtgcgctgcaggacctgctggagcagattcagggcacgaaa
gagcagacggttatcagcacgatgatgctgcggtcgatgaagcaggccaaatacgatgcg
gagagtacaggccacttcggcctcgctgccgaatactattcccacttcacttcaccgatc
cgccggtatcctgaccttgttattcaccgggtcatgcgtgaggtgcttgagaacggcgga
gccctgactgagaagcggcaggaatacttggcaacacggatgccggatatcgcccagcaa
tcctcagaacgcgagcgtgtggcggttgaggcggaacgcgatacggagcagctgaagaag
tgcgagttcatgcaggataaggtaggcgaggaattcgaggccatgatcagcagtgtgacc
agcttcgggatgttcatcgagctggataacaccgtcgaaggtctcatacgtctcagcgcg
ctgagcgatgattactaccacttcgacgaggcccatatggcgctcatcggcgagcgcacc
tccaaggtgttccgcatcggcgatgaggtgaagatccgcgttgccaaggttaacatggac
gaccacacgatcgacttcgagctggtcgacatgaagccgcgcgcggcaggcgagcaccgc
agctatggcggccgcggcggcaaaggcggccgtccgggggccggcggcttcggcaagccg
tccggcggtaaagccggcagcggcggcaagggccgcggcgggaaaggcaagcccggcgct
gcaggcggcgcgggcaagggcaaggccggcggcgcagggaacgccggcaaacgcaaaggc
ggcgcggtagcgaccggcgcctgggagacaacgccgcgcaatgatgcggcgaccggtggc
ggcgcacccgcaggtgcgcctgcgcgcggcaagcgcgggggcggcccggctgaggctgcg
cgccgggcctttgccgccctgaacagcgaagcgggcggcagcagtgcgccgcgtgagcgc
agcggcggtgggcgtggccgcggcggagaggccggaggcggtgccgggggacgcggcatc
agcttcggcttcggctccggcaagggcggctacggcgcgccgacaggcggcgatgccggc
agcggcgagctgcgcggcgttgatgcgaacacccggttcagcagccgggaggatcgcggg
ttcgagagccgcggcagcggctcggaaggcaagaacaagggccgccgcaagaagaacaaa
ggcggccccttcatcggcgcttcggtgacgccgggcaatgtggagacgtcggataacgtt
tctgctaagcgcagcgacaacggcagcaacgccgaaagtgcggtccgccggaagaaaaag
aagaaaaagcctcaggaatag
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