Paenibacillus tianjinensis: JRJ22_09705
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Entry
JRJ22_09705 CDS
T07842
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptj
Paenibacillus tianjinensis
Pathway
ptj03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JRJ22_09705
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptj03019
]
JRJ22_09705
03009 Ribosome biogenesis [BR:
ptj03009
]
JRJ22_09705
Enzymes [BR:
ptj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JRJ22_09705
Messenger RNA biogenesis [BR:
ptj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
JRJ22_09705
Ribosome biogenesis [BR:
ptj03009
]
Prokaryotic type
rRNA helicases
JRJ22_09705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_22
CMS1
AAA_19
AAA_30
Motif
Other DBs
NCBI-ProteinID:
QSF46805
LinkDB
All DBs
Position
2237370..2239022
Genome browser
AA seq
550 aa
AA seq
DB search
MKTFAEFGLEPKVLQAITELGFEEATPIQEQAIPIALTGADMIGQAQTGTGKTAAFGIPL
ISKIAREDEKILALIMTPTRELAIQVAEEIGKLTRFKGLRSLAIYGGQDIGRQIRGLKKK
PQIIIGTPGRLLDHINRKTIRLDDVQTIVLDEADEMLDMGFMEDIQSILKLVPEERQTML
FSATMPPNIQRLAQQFLKNPQHVSVIPKQISAPLIDQAYIEVPERQKFEALSRLIDMESP
ELAIVFGRTKRRVDELAEGLQKRGYSADGLHGDLSQNQRDAVMRKFRDGSIDVLVATDVA
ARGLDVSGVTHVINFDLPQDPESYVHRIGRTGRAGKEGTAWSFVTPREMDHLHLIERVTR
HRITRKPLPTMAEAIEGKQRITAERLLAMVEAGELNEYKGIAIQLLEQYDSVQLLSAAMK
LLTGDSKDAQVELTPEDPIRAKRRGGKNDIRSGRKPSGGYGGNRTGSGSGGGYRGNRDGG
SSYGGGYKGNRDSSTGSSTRGGYSSGYGGNSSTGGYKGNRDDAGRSADRKPQSRPSSTGA
RPAKREDYDI
NT seq
1653 nt
NT seq
+upstream
nt +downstream
nt
ttgaaaacattcgcagaattcggcttggagccaaaagtgctacaagcaatcacagagcta
ggatttgaggaagcaacaccgattcaggagcaggcgattcccatcgcactgacaggagca
gatatgatcggtcaggcccagacgggtacaggtaaaacagctgctttcggtattcctctt
atttccaagatcgcccgtgaagatgaaaagatcctggcgcttattatgacgccaacccgt
gagctggccattcaggttgcagaagaaatcggcaaactgacccgcttcaaaggacttcgt
tcgctggcaatttacggcggacaggatatcggtcgtcaaatccgcggactgaagaaaaaa
ccgcaaattattattggtactccaggccgtttgcttgaccacattaaccgtaagaccatc
cgtctggatgatgttcagaccatcgtgctggatgaagctgatgaaatgctggatatgggc
ttcatggaagatatccaatccatcctcaagcttgttccggaagaacgccaaactatgctg
ttctcagctacaatgcctcccaacattcaacgccttgcccagcagttcctgaagaacccg
cagcatgtttccgtaattcctaagcagatcagtgcaccgctgatcgatcaggcttacatt
gaagtgcctgagcgccagaaatttgaagcactaagccgtctgattgatatggaatcccct
gaactggcaatcgtcttcggccgtaccaagcgccgggttgacgaacttgctgaaggtttg
cagaaacgcggttactccgcggacggattgcatggcgacttgtcccagaaccagcgtgat
gcggtaatgcgcaagttccgcgatggcagcatcgacgttctggtagctactgacgtagca
gcacgcggactcgacgtatccggcgtaacgcatgttatcaactttgaccttccgcaggat
ccggaaagctatgtacaccgtatcggccgtaccggacgcgcgggtaaagaaggtacagca
tggtccttcgtgacacctcgcgaaatggatcacctgcatctaattgagcgtgttacacgc
caccggattacccgtaaaccgctgcctaccatggctgaagccattgaaggtaaacaacgc
attacagcagaacgcctgctggcaatggttgaagctggagaactgaacgaatacaaaggc
atcgccattcagcttctggaacaatatgattctgtacaattgctgtctgcagcaatgaag
ctgcttaccggcgacagtaaggatgcacaggttgaattgactccggaagatccaatccgc
gctaaacgccgcggcggcaagaacgatattcgcagcggacgcaagcctagcggcggctat
ggcggtaaccgtaccggctccggcagcggcggcggataccgcggcaaccgtgacggcggc
agcagctatggcggcggctataaaggtaaccgtgacagcagcaccggcagcagcacccgc
ggtggatacagcagcggctacggcggcaatagcagcaccggcggctacaagggcaaccgt
gatgatgcaggtcgcagcgcagaccgcaagccacagtcacgtccaagcagcacaggtgca
cgtccggctaaacgcgaagattacgatatctaa
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