Paenibacillus tianjinensis: JRJ22_12115
Help
Entry
JRJ22_12115 CDS
T07842
Symbol
hrpB
Name
(GenBank) ATP-dependent helicase HrpB
KO
K03579
ATP-dependent RNA helicase HrpB [EC:
5.6.2.6
]
Organism
ptj
Paenibacillus tianjinensis
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptj03019
]
JRJ22_12115 (hrpB)
Enzymes [BR:
ptj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
JRJ22_12115 (hrpB)
Messenger RNA biogenesis [BR:
ptj03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
JRJ22_12115 (hrpB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HrpB_C
Helicase_C
DEAD
CON_HrpB
HA2_N
ResIII
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
QSF47744
LinkDB
All DBs
Position
2741190..2743682
Genome browser
AA seq
830 aa
AA seq
DB search
MKQLPIMQVLPDLKIILKHSKAAVLIAEPGAGKTTGTPPAFLDEPWMDGKTILMLEPRRL
AARSAAAYMAACLGEQVGQTVGYRMRMDSKVGKQTRIVVVTEGVLTRMLQSDPSLGDVGL
VIFDEFHERSLHADLGLALTLEAQSVLREDLRILIMSATLDGERVSALLDGAAVVDCPGR
TYPVETFYAPPQRDTPLEQSAAAAVLRALSEQPGDVLVFLPGEREIRRTERELEGSRLPE
GTVVRPLYGQLPQAIQDAAVAAAVPGERKVVLATSIAETSLTIEGVRTVIDTGLRRTQVF
SPRTGMPRLTTVPVSKASADQRRGRAGRTAPGVCYRLWSREEHARLPDDNVPEIMETDLA
QLALELALWGVRDPAALPWLDAPPAAPYAQGVALLRQLGALDAGGAITPHGRSMAALGAH
PRTAHMLLRAAALGEAPLACRLAALLQERDLFKGPANQSSDLTLRVEALLRYERSGDTGG
ADPAVLRAVQRESRNLLAQLQAAPGEVPGDLSRIGLLLSFAYPDRVGQKRGEGAFLLSGG
RGAAMREGQPLARSPYIVAAGVDDRAGQGRIILAADLPEAELLKEHADSLTEEREVYWDK
ESGSVKARRRTLFGALALKETTHERPTAEETEEVLLSVISAEGLGVLPWDKGTIQLRQRM
AFMHAVRTDWPDVSDEALLQSLHEWLRPYIQGMRNLRDLQRLPLSKALEGMLDWSGGQTL
DKEAPTHITVPSGSRIPLDYGNPGTPVLAVRLQEMFGQADTPRIGLGKVPVLLHLLSPAR
RPMQVTSDLASFWRSTYFEVKKDLKGRYPKHYWPDDPLQAEPTSRTRPAK
NT seq
2493 nt
NT seq
+upstream
nt +downstream
nt
atgaagcagcttccaattatgcaggtgctccctgacctgaaaataatactaaaacatagt
aaagccgccgtgctaatcgccgaacccggagcagggaaaacgaccggtacgcctccggct
tttttggacgagccctggatggacggcaaaacgattctgatgctggagccaagacgcctc
gccgcccggtcagcagctgcgtacatggctgcttgcctcggggagcaagtcgggcagacg
gtcggttaccggatgagaatggacagtaaggtaggtaagcagacgcggattgttgtggtg
actgaaggcgtgctgacacggatgctgcagagcgatccttcccttggggatgtcggactt
gtgatcttcgatgaatttcatgagcgtagtctccatgccgatttggggcttgccttgaca
cttgaggcgcaatccgttctccgtgaggatctgcggattctaatcatgtcggctacgctg
gacggtgagcgtgtctcagcgctgctggacggcgctgccgtggtggattgtccgggccgg
acctatccggtagagacattctatgctcccccgcagcgtgatactccgctggagcaatct
gctgcagcggctgtcttgcgcgcactctctgagcagcctggcgatgtgcttgtgtttctg
cccggtgaacgggagatccgccgaaccgaacgcgagcttgaagggagccggcttccggaa
ggaacggtggtgcgtccgctgtacggccagcttccgcaggcgattcaggatgctgcggtg
gccgctgctgtacccggcgagcgcaaggtcgtgctggcgacatcgatcgccgaaacgagc
ttaacgatcgaaggggtgcgaacggtaattgataccggcctaaggcgcacccaggtattc
tcgccacgtaccggcatgcctcggctgacgacggtgccggtatcaaaggcatcggctgat
cagcggcgcggccgggcgggtcggacggcacctggtgtctgctacaggctgtggagcagg
gaggagcacgcccgtcttccggatgacaacgtcccggaaatcatggaaaccgacctggcg
cagctcgctctggagctggcgctgtggggcgtgcgcgatcctgccgcgctgccctggcta
gacgcgccgcctgccgcgccttacgcgcagggcgtggcgctgctgcgccagctcggcgcg
ctggacgccggcggcgccatcacgccgcacggccgcagcatggccgcgcttggcgcacac
ccgcgcaccgcgcatatgctgctgcgtgcggcagcgcttggcgaagcgccgctcgcctgc
cggctggcggcgctgctgcaggagcgggacctcttcaagggtcccgcgaatcagagcagc
gacctcacgctgcgcgtggaggcgctgcttaggtatgagcgctccggcgacaccggaggc
gcggaccctgcagtcttgcgcgcggtgcagcgcgagagccggaacctcctggcgcagctg
caggccgcgccgggggaagtgcccggcgacctcagccgtataggcctgctgctgtcgttt
gcctatcccgaccgggtcgggcaaaaacgcggcgaaggcgcgtttctgctctccggcggc
cggggggcggcgatgcgggaagggcagccgctcgcgcgctcgccttatattgttgcggcc
ggcgtagatgaccgcgccggacagggccggattatcctggctgcggatctgccggaagcc
gagctgctgaaggagcacgcagacagcttgaccgaggagcgggaggtctattgggataaa
gagagcggaagcgtcaaagcacgccggaggaccctgtttggtgctctggctctaaaggaa
actacacatgaacgccccaccgcagaagagacggaggaagtgctgctgtcagtaatctca
gcggaaggcttaggagtgctgccgtgggataaaggcactatccagctgcggcagcgaatg
gcgttcatgcatgccgtacggacagattggccggatgtctcggatgaagctttgctgcag
tccctacatgaatggcttcggccgtatattcagggaatgcgcaatctccgggatcttcag
cggctgcctttatccaaggcactggaaggcatgctcgattggagcggcggccagaccttg
gataaagaagcgcctacacatattacagtgcccagcggatcacgtataccattagactac
ggaaatccggggacaccagtacttgcggtaaggctgcaggagatgttcggccaggcggat
acaccgaggattggattaggtaaggttcctgtacttctgcacctcctctctccggcacgg
cggccgatgcaggtcacctctgatttggccagcttctggcggagcacttattttgaggtg
aagaaggatctgaaagggcgttatcccaaacattattggccggatgatccgttacaggct
gaaccgacaagccggacgcgcccggccaaataa
DBGET
integrated database retrieval system
