Paenibacillus tianjinensis: JRJ22_16765
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Entry
JRJ22_16765 CDS
T07842
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
ptj
Paenibacillus tianjinensis
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
ptj03032
]
JRJ22_16765 (topA)
03400 DNA repair and recombination proteins [BR:
ptj03400
]
JRJ22_16765 (topA)
Enzymes [BR:
ptj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
JRJ22_16765 (topA)
DNA replication proteins [BR:
ptj03032
]
Prokaryotic type
DNA Topoisomerases
JRJ22_16765 (topA)
DNA repair and recombination proteins [BR:
ptj03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
JRJ22_16765 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Toprim_3
Lar_restr_allev
Zn_ribbon_RPB9
Auto_anti-p27
DUF7340
Motif
Other DBs
NCBI-ProteinID:
QSF42947
LinkDB
All DBs
Position
complement(3709813..3711909)
Genome browser
AA seq
698 aa
AA seq
DB search
MADTLVIVESPAKAKTIGKYLGSKYIVKASMGHIRDLPKSQIGVEVENDFNPKYITIRGK
GSILKELKDARKKVKKVYLAADPDREGEAIAWHLAHALDLDNTEECRVVFNEITKQAVKD
AFKTPRKINMDLVNAQQARRILDRLVGYKISPLLWKKVKKGLSAGRVQSVAVKIIMDREN
EISAFEPTEYWSITAKLGIRDSVFEAKFHKLNGEKKELGRESEVQEVLEAIKNADFKVRE
VKEKERQRHPSAPFTTSSLQQEAARKLGFRAAKTMSVAQQLYEGVELGKEGTVGLITYMR
TDSTRLSATAQEEAKELILAKYGEKFIPESPRQYSKKAAGAQDAHEAIRPTSALREPEMV
KEFMSRDQFRLYKLIWERFVSSQMSSALLDTLSVDITAGTAIFRAVGSKVSFPGFMKVYV
EGNDDGTTDEEKFLPPLKAGDDLVKQDIEPKQHFTQPPPRYTEARLVKTLEELGIGRPST
YAPTLETIQKRGYVAIEEKKFMPTELGELIIEQMEQFFPEILDVEFTAHMEGDLDHVEEG
AEDWVKVLAGFYESFEKRLLFAEEEMKEIEIEDEVSDELCEKCGKPMVYKLGRFGKFLAC
SGFPDCRNTKPIVKDIGVSCPKCHEGKVVERRSKKGRVFYGCDQYPGCDFVSWDRPSIKP
CPVCGSWMVEKRNKQGTKLQCTSCDHTEAVLEGEELAE
NT seq
2097 nt
NT seq
+upstream
nt +downstream
nt
atggcagatacattagtcattgtcgaatcgccggcaaaagcgaagacaatcggcaaatat
ttaggcagtaaatatattgtaaaggcttctatgggacatatcagagatctgccgaaaagc
cagattggcgtcgaggtagagaatgacttcaatcccaaatatatcacgattcgcggtaag
ggatcgattctcaaggaactaaaagatgcccgcaaaaaagtaaaaaaagtctatctggcg
gctgacccggaccgcgaaggtgaagctattgcctggcatctggcgcatgcgctggatttg
gataacacagaggagtgccgggttgttttcaacgagatcacgaagcaggctgtaaaggat
gcttttaagaccccgcgcaaaattaatatggatttggttaacgcgcagcaggcccggcgg
attctggaccggctcgtcggttataaaatcagtccactattatggaagaaagtcaaaaag
ggcttgtcggccgggcgggtgcaatcggttgctgttaagattatcatggaccgagagaat
gaaatctccgcttttgaaccgactgaatattggagtattaccgcaaagctaggcatccgc
gattccgtctttgaagccaagtttcacaagctgaatggtgaaaagaaagagctgggccgg
gaaagcgaagttcaggaagtgctggaagccatcaagaatgctgatttcaaggtgcgggaa
gtgaaggagaaggaaagacagcgacatccttcggcaccgtttaccacaagctcacttcag
caggaagcagcccgcaagctgggctttcgtgctgccaaaaccatgtctgtggctcaacag
ctgtatgaaggtgtagagcttggcaaggaaggcacggtcggtttgatcacctacatgcgt
accgactccactcgtctttccgctaccgctcaggaagaagcgaaggagctgattttggcc
aagtacggagagaagtttattccggaatcaccgcgccaatattccaaaaaagctgcagga
gcccaggatgcgcatgaagcgattcgtccaacctctgcactgcgcgaacctgagatggtc
aaagagttcatgagccgtgatcaattccgcttatataaactgatctgggagcgcttcgtc
tccagtcagatgtcctctgctctacttgatacactctccgtggatattactgcaggaact
gcaatcttcagagcagtcggctccaaggtttctttccctggttttatgaaggtgtatgta
gaaggtaatgatgacggtacgactgacgaagagaagtttttgccgccgctgaaagccggg
gatgacctggtgaagcaggacattgagcctaagcagcatttcacccagccgccgccgaga
tatactgaagcacgtctggttaaaacactggaagagctgggtattggccgcccgagtacg
tatgcacctacactggagacaatccagaaacgcggctacgtagcgattgaagagaagaaa
tttatgcctactgagctaggcgagctgataatagagcaaatggaacaattcttcccggaa
attctcgatgtggaatttactgcgcacatggaaggggatcttgaccatgtggaagagggc
gcggaggattgggtaaaagtattggccggattttatgaatcttttgagaagcgcctgctg
tttgctgaagaagaaatgaaagagattgagattgaagatgaagtgtccgatgagctctgc
gagaaatgcgggaagccgatggtttataaactgggacggttcgggaagttcctggcctgc
tcaggattccctgactgccgcaataccaagccgattgtgaaggatatcggagtaagctgt
ccgaagtgtcatgaagggaaggtcgtcgagcgtcgcagcaagaaaggacgcgtattctat
ggctgcgatcagtaccctggttgtgatttcgtctcctgggaccgtccttcaattaaacct
tgtccagtttgcggctcctggatggtggagaagcgcaacaagcaaggcacgaagctgcaa
tgtacctcttgtgaccacactgaggctgtacttgagggcgaagaattagcagaataa
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