Paenibacillus tianjinensis: JRJ22_22040
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Entry
JRJ22_22040 CDS
T07842
Symbol
rpoD
Name
(GenBank) RNA polymerase sigma factor RpoD
KO
K03086
RNA polymerase primary sigma factor
Organism
ptj
Paenibacillus tianjinensis
Pathway
ptj02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
JRJ22_22040 (rpoD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptj03021
]
JRJ22_22040 (rpoD)
Transcription machinery [BR:
ptj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
JRJ22_22040 (rpoD)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Sigma70_r3
Sigma70_r2
Sigma70_r4
Sigma70_r1_1
Sigma70_r1_2
Exonuc_VII_L
DUF2408
Motif
Other DBs
NCBI-ProteinID:
QSF43898
UniProt:
A0ABX7L6V0
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Position
complement(4708313..4709449)
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AA seq
378 aa
AA seq
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MANDQHTELEAEFTLDQVKDQLIEHGKKRSSLNYKDIMEKLSPFDQDPEQMEEFYEQLSD
LGIEVVNENDEEGSNPLRQSEDNENSEGDDFSFDDDLSLPPGIKINDPVRMYLKEIGRVP
LLSADDEVELAMRIKNGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIK
AVEKFDHNKGFKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVSRQLLQEL
GREPSPEEIAAEMELTVEKVREIMKIAQEPVSLETPIGEEDDSHLGDFIEDQEALAPADA
AAYELLKEQLEDVLDTLTEREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKA
LRKLRHPSRSKRLKDFLE
NT seq
1137 nt
NT seq
+upstream
nt +downstream
nt
atggcgaacgatcagcatactgaactggaagcagaatttactctggatcaggttaaggac
cagcttattgaacacggcaagaaaagatcatcattgaattacaaagatattatggagaaa
ttgtcgccgtttgatcaagaccccgagcagatggaggaattctacgagcagctcagcgac
ctcgggatcgaggttgtcaatgagaatgatgaagaaggctccaatccgcttcggcagagc
gaggacaatgagaacagcgaaggtgatgatttcagcttcgatgacgatttgtccttgccg
ccgggaatcaaaattaacgatccagtccggatgtatttgaaggaaatcggacgtgtgcca
ctgctatcagcagatgatgaagttgagctggctatgcggatcaaaaatggtgacgaggaa
gccaaacgccgtctggccgaagccaacctgcgtctcgtggtaagtatcgccaaacgttat
gtcggacgcggcatgctgttcctggatttgattcaggaaggcaatatgggtctgatcaaa
gcggtggagaagtttgaccataacaaaggattcaaattcagtacctatgcgacatggtgg
attcgccaggcgatcacacgggctatcgctgaccaggcacgtacgatccgtattccggtg
catatggtggaaacgatcaataagttgatccgtgtctcccgccagctgctgcaggaactg
ggacgtgaaccttcgccggaggaaattgctgcagaaatggagctgaccgttgagaaggtt
agagaaatcatgaagattgctcaggaaccggtatcactggaaactcctatcggggaagag
gatgattcgcatctcggcgatttcatcgaggatcaggaggcgctggcgcctgcggacgcc
gctgcttatgagctgctgaaggaacagctggaggatgtactggacacgctcactgagcgt
gaagagaatgtgcttagactccgtttcggtctggatgacggacggacaagaacgcttgag
gaagtcggcaaagtattcggtgttacgcgtgagcggattcgtcagatcgaagccaaggcg
ctgcgcaagctgcgtcacccgagccgcagcaaacggcttaaggatttcctcgaatag
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