Paenibacillus tianjinensis: JRJ22_22565
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Entry
JRJ22_22565 CDS
T07842
Name
(GenBank) UvrD-helicase domain-containing protein
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
ptj
Paenibacillus tianjinensis
Pathway
ptj03420
Nucleotide excision repair
ptj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
JRJ22_22565
03430 Mismatch repair
JRJ22_22565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptj03400
]
JRJ22_22565
Enzymes [BR:
ptj01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
JRJ22_22565
DNA repair and recombination proteins [BR:
ptj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
JRJ22_22565
MMR (mismatch excision repair)
Other MMR factors
JRJ22_22565
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C_2
UvrD_C
AAA_19
DEAD
Viral_helicase1
AAA_30
PhoH
SLFN-g3_helicase
NACHT
ResIII
nSTAND3
T2SSE
AAA_16
Motif
Other DBs
NCBI-ProteinID:
QSF43992
LinkDB
All DBs
Position
complement(4840692..4842893)
Genome browser
AA seq
733 aa
AA seq
DB search
MEDNFQSAYQEEEDRLNSTLTEIDSTLERLRSIPVYTGHDYTEQVLEDSREQRRKDLAKL
RQEPYFGRLDFQGSDEDDRKALYIGKIGADREQVSDRPLVIDWRAPVASLFYSFTGGTEP
VTYEAPEGLIEGLVYLKRNVVIRKRILERVADTYNRDSDAPVVSDEFLVYRLGENKDNRL
RDIVSTIQEEQDKIIRAVKNTALIIQGVAGSGKTTVALHRLAFLLYQYKDQVSAEKMIIF
APNRMFLDYISDVLPELGVGNIAQSTFPDWAAEVLDITLPEQNTAETLNRWFESAGGMPD
ITEETPGRFKGSTVLMGVIESAVRQLETGAVPEGDFSPWEGAVLRRSMILRWHNEEYAPY
PPLKRKERVMARIHRWIEMELKKSPSAAALKDRKKKGAAREKAYAAKWPKYDPLMIYKQI
FRAAKVPEDWPAEAPEQIPQAVLKETAKDLKKGILREEDLPPLLYIHYLLSGNEGGERFD
HIVIDEAQDFSPFQIAVLDLYVKGHSFTILGDLSQGIHAYKGVHEWDEMQSLFAPEHTAY
HALTRSYRSTMEIIEFANGILSSGVHSPLLAVPVFRSGNPVRLIAYGEEQSKAGKSTDPR
VNAVRTALEALSVREYRTVAVLTRSLREAAELHAELAADFADLHLIDGSMTQYLGGLSVL
PVYLSKGLEFDAVILADADADHYGAAAWDAKLMYVGCTRALHELWLLHSGELPEYVQMTG
EETVSGWPESSES
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
ttggaagacaactttcaaagtgcctatcaagaggaagaagacaggctgaatagtacgctt
acagaaattgattctacccttgagagactgcgcagcattccggtgtacacgggacacgat
tacacggaacaggtgctggaggactccagggagcagaggcgcaaagatctggccaagctt
aggcaggagccttatttcggacggcttgatttccaaggcagcgatgaggatgaccgcaag
gccctgtatatcggcaaaatcggtgcagaccgtgaacaggtaagcgaccgtccgctggtc
attgactggcgcgcaccggtagcaagcctgttctattcgtttaccggagggactgagccg
gtcacctatgaagcgccggaagggctgattgaggggctcgtctatctcaagcgcaacgtg
gttatccgcaagcgcattctggagcgggtggcggatacctataaccgcgacagcgatgca
ccggtggtgtcggatgaatttctcgtctaccgtctgggtgagaacaaggacaaccggctc
cgtgatatcgtctcgacgattcaggaggagcaggataagatcatccgtgcggtgaagaac
acggcgctgattattcaaggcgtggcgggcagcggtaaaacaacggttgcgctgcaccgg
ctggctttcttattgtatcaatacaaggaccaggtatcggcggagaagatgataatattt
gctccgaaccggatgttcctggattatatttcagatgtgctgccggagctcggcgtaggc
aacattgcccagagcacgttcccggactgggcagcggaggtactggatattaccctgcct
gaacagaacacggccgagactctgaaccggtggtttgaatcggcgggcggtatgccggat
attacggaagagacgccgggccgcttcaaaggctctactgtgctgatgggtgtaattgag
tcagcggtcaggcagctggagaccggggcggttcccgagggcgatttcagtccctgggaa
ggcgctgtgctgcgccgctcgatgatcctccgctggcacaatgaggaatacgcaccttat
ccgccgcttaagcgcaaagaacgggttatggcgcggattcaccgctggattgaaatggag
ctgaagaaaagcccatcggcggcagcgctgaaggatcggaagaaaaaaggtgcggcccgc
gaaaaagcctacgccgctaaatggcctaaatatgatccgctgatgatctataaacaaatt
ttccgcgcggcgaaggtgcccgaggactggccggcggaagcgccggagcagattccgcaa
gctgtcctcaaagagacggccaaggatctcaaaaaaggtatcctgcgcgaggaggatctg
ccaccgctgctctatatccattatctgctcagcggaaacgaaggcggtgagcgctttgac
catatcgtaatcgatgaagcgcaggatttctcgccgttccagattgctgtgctggacttg
tatgtgaaggggcactccttcacgattctaggcgatctgtcccaaggaattcacgcctat
aagggagtgcatgaatgggatgagatgcagagcctgttcgcacctgaacatacggcttac
catgcactgacccgaagctaccgctccacgatggagattatcgagtttgctaatggcatt
ttgtcatccggtgtccatagtccgctcttggctgtgccggtcttccggagcgggaacccg
gtccggctgattgcctacggcgaagagcagtctaaggccggcaaaagtacggacccgcgc
gtcaatgccgtcagaacggcgctggaggcgctctccgtccgtgaataccgtacggttgct
gttcttacccgcagcctgcgtgaagccgcggagctgcacgcggagctggccgcagatttt
gccgacctgcatctgattgacggcagcatgactcaatacctgggcggcctgtctgtactg
cctgtatacttgtctaaagggctggagttcgatgcggttatccttgctgatgccgatgca
gaccattatggagcagccgcctgggatgctaagctgatgtatgtcggctgtacacgtgcc
cttcatgaattatggctgctgcacagcggagagcttcctgagtatgtgcaaatgaccggc
gaagagacagtcagcgggtggccggaatcatccgaaagctga
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