Paenibacillus tianjinensis: JRJ22_26265
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Entry
JRJ22_26265 CDS
T07842
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
ptj
Paenibacillus tianjinensis
Pathway
ptj03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
ptj00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
JRJ22_26265 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptj03021
]
JRJ22_26265 (rpoC)
03400 DNA repair and recombination proteins [BR:
ptj03400
]
JRJ22_26265 (rpoC)
Enzymes [BR:
ptj01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
JRJ22_26265 (rpoC)
Transcription machinery [BR:
ptj03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
JRJ22_26265 (rpoC)
DNA repair and recombination proteins [BR:
ptj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
JRJ22_26265 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Motif
Other DBs
NCBI-ProteinID:
QSF44625
LinkDB
All DBs
Position
complement(5626475..5630086)
Genome browser
AA seq
1203 aa
AA seq
DB search
MLDVNNFEFMKIGLASPEKIRSWSRGEVKKPETINYRTLKPEKEGLFCERIFGPQKDWEC
HCGKYKRVRYKGVVCDRCGVEVTRAKVRRERMGHIELAAPVSHIWYFKGIPSRMGLALDM
SPRSLEEIIYFASYVVTDPGETPLEKKQLLSEKEYRSYREKYGYGFQAGMGAEAVKKLLQ
DIDIEKELEFLKEELRTAQGQRRNRAIKRLEVIEAFRNSGNKPDWMIMDVLPVIPPELRP
MVQLDGGRFATSDLNDLYRRVINRNNRLKRLLDLGAPDIIVQNEKRMLQEAVDALIDNGR
RGRPVTGPGNRPLKSLSHMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPYLKMYQCGLPKK
MALELFKPFVMKELVNKGLAHNIKSAKRKVERVSPEVWDVLEEVIREHPVLLNRAPTLHR
LGIQAFEPILVEGHAIRLHPLVCTAYNADFDGDQMAVHVPLSAEAQAEARLLMLASGNIL
NPKDGKPVVTPSQDMVLGTFYLTMDNKEEKGTGMILRTVNEAVSAYQRGTAGLHARVAIP
VKALGKTSFTEAQQGAMLITTIGKIIFNEIYPSSFPYINEATKTNLLQGTPEKYFIYEKG
ADIREAIVNAPDASAVGKEYLGLIIARCFETYHTTKTSMILDRIKQLGFTYSTRSGVTVA
VSDVIVPEEKATILKESEAKVDVVANQYRRGLITNDERYDRVIEIWSKTKDDLTNVLLKS
MDRFNSIMLMVDSKARGNKSQITQLGGMRGLMATPSGRIFELPIKANFREGLTVLEYFIS
THGARKGLADTALRTADSGYLTRRLVDVAQDVIVREEDCGTDKGFTVSRIQDGKEVIEDL
YDRIEGRYSFETVRHPETKEIIVHRNDLIDSDKAEEIVNAGVTKLQIRSVLSCRARHGVC
KKCYGRNLATGKFVEIGEAVGIIAAQSIGEPGTQLTMRTFHTGGVAGDDITQGLPRIQEL
FEARNPKGQATISEIDGVIKEIRETKDRREIEVQGEAESKTYSITYGSRLRVSEGQEIEA
GDELTDGSIDPKEMLRIKGIRGVQNYILQEVQRVYRNQGVEINDKHIEVMIKQMLRKIRI
IDAGDTNLLPGAFADIHEYEAANKEAILSGNEPAVAKPVLLGITKASLETDSFLSAASFQ
ETTRVLTDAAIKGKVDKLLGLKENVIIGKLIPAGTGMNRYRNVKLSDPNEQSEQEALETV
PAE
NT seq
3612 nt
NT seq
+upstream
nt +downstream
nt
ttgttggacgttaacaattttgaatttatgaaaatcgggcttgcttctccggaaaaaatt
cgttcttggtcccgcggagaagtgaaaaaaccggaaaccattaactatcgtacgttgaaa
ccggaaaaagaaggccttttctgcgagcgcatttttggaccgcaaaaagactgggaatgt
cactgtggtaaatacaaacgcgtccgttataagggcgttgtctgcgaccgctgcggtgtg
gaagttacccgcgctaaagtccgccgcgaacgtatgggccatatcgagctggcagctccg
gtatctcatatctggtacttcaagggtattcctagccgtatgggtctggctctggacatg
tccccaagatcgctggaagagattatctacttcgcatcttatgttgtaactgatccgggt
gaaacaccgctggagaagaaacagctgctgtccgagaaagaataccgcagctaccgtgag
aaatacggctacggattccaggcgggtatgggtgctgaggcagttaaaaagctgcttcag
gatatcgacatcgaaaaagaattggaattcctcaaggaagagctgcgtacggctcaaggc
caacgccgcaaccgggcaatcaaacgtctggaagtcattgaagcgttccgcaattccggc
aacaagcctgactggatgatcatggatgtgcttccggtaattcctccggaacttcgtcca
atggttcaactggatggcggccgttttgctacgtctgaccttaatgacttgtaccgccgc
gtaattaaccggaacaaccgtctgaagagactgctggatctgggtgctcctgatattatc
gtgcagaatgaaaaacggatgcttcaggaagctgtcgatgcactgatcgacaacgggcgc
cgtggccgtcctgtaacaggtcctggtaaccgtccgcttaaatcactcagccacatgctg
aagggtaaacaagggcgcttccgtcagaacttgctcggtaaacgtgttgactactccgga
cgttccgttatcgttgtgggaccatatctgaagatgtaccaatgcggacttccgaagaaa
atggctctggagctcttcaaaccgttcgtaatgaaagaactggttaacaaaggccttgcc
cataacatcaagagcgcaaaacgtaaagttgagcgtgtaagtcctgaagtatgggatgta
cttgaagaagtaatcagagagcatccggttctgctgaaccgtgcccctacgctgcacaga
ctcggtattcaagcctttgaaccgatcctggtagaaggtcatgctatccgtcttcacccg
ctcgtatgtacggcttacaacgccgactttgacggtgaccaaatggcggtgcacgttcct
ctgtcagccgaagctcaagctgaagcacgtctcctgatgctggcatccggtaacatcctt
aaccctaaggacggcaagccggttgttactccttcccaggatatggtccttggaacgttc
tatctgacgatggacaacaaggaagaaaagggcacaggcatgattctgcgtaccgtgaac
gaagctgtttcagcttaccagcgcggaactgcgggattgcacgcacgtgtagctattccg
gttaaagccttgggtaagaccagctttacggaagcgcagcaaggcgcaatgctaatcaca
actatcggtaaaattatctttaacgaaatttatccgagcagtttcccttatatcaacgaa
gctaccaaaacgaacctgctgcaaggtacacctgagaaatactttatctacgaaaaaggt
gcggatatccgtgaggctatcgtgaatgctccggatgcaagcgcggtaggtaaggaatat
ctgggtctaatcattgcacgctgcttcgagacttaccatacaaccaagacatccatgatc
ctggatagaatcaagcagctcggcttcacgtattccacacggtccggtgttactgttgcc
gtatccgacgttatcgtgccagaagagaaggctactattctgaaagagtctgaagctaag
gttgatgtggttgccaaccaatatcgccgtggtctgattaccaatgacgagcgctatgac
cgcgttattgaaatctggtcgaagacaaaggatgatcttaccaatgtcctgctgaaatcg
atggaccgctttaactctatcatgctcatggttgattccaaggcgcgtggtaacaaatcg
cagatcacccagctgggcggtatgcgtggactgatggcaacaccttcaggccggattttc
gagttgccaatcaaagcgaacttccgtgaaggtctgacggtcctcgagtactttatctcc
acccacggagcgcgtaaaggtctggccgatacagcgctgcgtactgcggattccggttac
cttacacgtcgtctcgtagacgtggcccaagacgtaatcgtccgtgaagaagattgcgga
acagataaagggtttaccgttagccgaattcaggatggtaaagaagttatcgaagatctg
tatgaccgtattgaaggccgttactccttcgaaacagtccgtcatccggaaacgaaggaa
atcatcgttcaccgcaacgatctgattgactccgacaaggctgaagagattgttaacgct
ggtgtaaccaagctgcaaatccgctctgttctgagctgccgtgcccgtcacggggtctgc
aaaaaatgctacggacgtaacctggcaacaggtaaattcgtggaaatcggtgaagctgtc
ggcattatcgccgcccaatccatcggtgaaccgggaacccagcttaccatgcgtacattc
cataccggtggtgttgccggtgatgacatcacgcaaggtttgccgcgtatccaagagttg
tttgaagcccgtaaccctaaaggtcaggcgacaatcagtgaaattgacggggtaatcaag
gagatccgcgaaaccaaagaccgccgcgaaatcgaggttcaaggtgaagctgagtccaag
acctactccatcacttatggttcgcgtctgcgtgtcagtgaaggccaggagattgaagct
ggggatgaactgacagacggctcgatcgaccctaaagaaatgctgcgtatcaaagggatc
cgtggggtacagaactacattctgcaagaagtgcagcgtgtataccgtaaccagggcgta
gaaatcaatgataagcacattgaagttatgatcaagcagatgctgcgcaaaatccgtatt
atcgacgccggggataccaatctcctgccaggagcttttgcggacattcatgaatatgaa
gcagccaacaaagaagcaattctttctggtaatgaacctgcggtggccaaaccggtattg
ctgggtatcaccaaggcatccctggagacagactccttcctgtctgcggcatccttccaa
gaaactacacgtgtcttgaccgatgcagcaatcaagggtaaagtcgataagctcctggga
ctgaaagaaaatgttatcatcggtaaactgatccctgcaggtacggggatgaaccgctac
cgtaatgtaaagctgagcgatccgaatgaacagagcgagcaagaagctctagagacggtt
ccagctgaataa
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