KEGG   Pseudomonas tructae: EXN22_15625
Entry
EXN22_15625       CDS       T07857                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
ptk  Pseudomonas tructae
Pathway
ptk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:ptk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EXN22_15625 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:ptk03400]
    EXN22_15625 (ligD)
Enzymes [BR:ptk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EXN22_15625 (ligD)
DNA repair and recombination proteins [BR:ptk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EXN22_15625 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C DNA_primase_S mRNA_cap_enzyme Tudor_3
Other DBs
NCBI-ProteinID: QBF27051
UniProt: A0A411MJT9
LinkDB
Position
3492902..3495340
AA seq 812 aa
MAKPLQEYARKRNFDATPEPVGAGLTRNEPHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKIRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGVWIPEDDPHKA
YAKGKLRFRLQGEKLSGIWNLFRTHLAGKQEQWLLIKSADAQARPEASYDILQAQPHSVL
SDRTLVTRTPRPTNRSRASKAALPDVLKPQLATLVETPPEGDWRYEVKFDGYRILTRIEG
EDVRLFTRNGHDWTAKLPSQARALAKLGLHSAWLDGEMVVANEHGVADFQALQNAFDQQR
DEQIIYYLFDLPYLNGKDLRQCPLEQRRSALAALLEKADAKRLRFSADFDQPVESLLDSA
CKLAMEGLIGKRLGSRYISRRSGDWIKLKCKQRQEFVIVGFTEPKGSRKSFGALLLALHD
ERGELRYAGKVGSGFTRTTLAHIHHRLAPLEISKPRFKNPPTGVEAKGVHWLKPRLLAEI
AYAQMTRDGVVRHSVFHGLRDDKPAKAIGLEQPVKSPTGKTSTLHLTHPQRIVDASSGIS
KGQVAEYYAQVARWILPHLKRRPVALVRAPDGLAGELFFQKNAAQLNIPGLEHHDKAEAG
QVLMIIDQAETLLGAVQMNTLELHTWNATAKDFDKPDRLILDLDPDPALPWKAMLEATQL
TLALLDELGLQSFLKTSGGKGMHIVVPLSRRAGWDEVKGFAKAMVQHLAGLFPERLSAVS
GPKNRVGRIFIDYLRNGKGATTVCAYSIRAREGLPVSVPIRREELTELKGANQWNLLNLG
PRLAEGDDPWAGYGLVRQSISKELRRRMGVQS
NT seq 2439 nt   +upstreamnt  +downstreamnt
atggccaagccgttgcaagagtacgcgcgcaagcgcaatttcgatgccacccctgagccg
gtgggcgcgggcttgacccgcaatgagccacacgcgctgcagtactgcatccagaagcac
gacgccagccacctgcactacgactttcgcctggagctggacggcaccctgaaaagctgg
gcgatccccaagggcccatcgctggatccaaagatcaggcgcctggctgtgcacgtcgaa
gaccatcccctggactacgccaacttcgagggccatattcccgaaggtcattatggcgcc
ggggatgtgatcgtctgggaccgtggcgtgtggattcccgaagacgatccgcacaaagcc
tatgccaagggcaagctgcgctttcgtttgcaaggcgagaaactttcgggaatctggaac
ctgtttcgcacccacctggcgggcaagcaggagcagtggctgctgatcaagtccgccgac
gcccaggcgcgcccagaggccagctacgatatcctccaggcccagccgcacagtgtgctc
agcgaccgtaccctggtcacccgtacaccccggccgacgaatagatcccgcgccagcaag
gctgccctgcccgacgtgctcaagccgcaactggccaccctggtagagacaccgcccgag
ggcgactggcgctacgaagtgaaattcgacggttaccgcatcctcacccgcattgaaggt
gaagatgtccgcctgttcacccgcaatggccatgactggactgccaaactgcccagccag
gcccgggccttggccaagctcggcctgcactcggcctggctagatggcgagatggtggta
gccaacgagcacggcgtggcggacttccaggccctgcaaaatgccttcgaccagcaacgc
gacgagcagatcatctactacctgttcgacctgccctacctcaacggcaaggacctgcgc
cagtgcccactggaacagcgccgcagtgccctggcggcactgctggagaaagccgatgca
aaacgcctgcgcttctctgccgattttgaccagcccgtcgagtcgctgctcgacagcgct
tgcaagctggcgatggaaggcctgatcggcaagcgcctgggcagccgctacatcagccgg
cgcagcggcgactggatcaagctcaagtgcaagcagcgccaggagttcgtcatcgttggt
tttaccgaacccaagggctcacgcaagtccttcggcgcgctgctattggccctgcatgat
gagcgcggtgagctgcgctatgccggcaaggtgggtagcggtttcacccgcaccacactg
gcgcatattcaccaccgcctggcgcctttggaaatcagtaagccgcggttcaaaaacccg
ccaaccggcgtcgaagccaaaggagtgcactggctcaagccacgactgctggccgaaatc
gcctatgcgcagatgacccgtgacggcgtcgtccgccattcagtgttccacggcctgcgc
gacgataaaccggccaaggccatcggcctggagcagcccgtgaaatccccgacaggtaaa
acctctaccctgcacctgacccacccgcaacgcatcgtcgatgccagcagcggtatcagc
aagggccaggtcgccgagtactacgcccaggtcgcccggtggatcctgccgcatcttaaa
cgccgccccgtggccctggtacgtgcccccgacggcctggctggcgaactgttcttccag
aaaaacgctgcgcaattgaacatccccggccttgaacaccacgacaaggccgaggccggc
caggtgctgatgatcatcgaccaggccgaaaccctgctgggcgccgtgcagatgaacacc
ctcgaactgcacacctggaacgccaccgccaaggacttcgacaagcccgacaggctgatc
ctcgaccttgacccggaccctgcgcttccctggaaggccatgctcgaagccacccagttg
accctggcgctgctcgacgaactgggcctgcagtcatttctcaagaccagcggcggcaag
ggcatgcacatcgtcgtaccgctaagccggcgtgccggttgggacgaggtcaagggcttt
gccaaggccatggtccagcacctggccgggttgttccccgagcgcttgtcggcggtatcc
gggccgaagaaccgggtcggtcggatcttcatcgactacctgcgcaacggcaaaggcgcg
accaccgtttgcgcctattcaatccgcgcccgcgaagggctgccggtatcggtgccgatt
cgccgcgaggaactgaccgaactcaagggcgcgaaccaatggaacctgctcaacctgggc
ccgcgcctggccgaaggcgatgatccgtgggccggctatggcctggtgcgccagtcgatc
agcaaggagctgcgccggcgcatgggtgttcaatcatga

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