Pseudomonas tructae: EXN22_15625
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Entry
EXN22_15625 CDS
T07857
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
ptk
Pseudomonas tructae
Pathway
ptk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
ptk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EXN22_15625 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptk03400
]
EXN22_15625 (ligD)
Enzymes [BR:
ptk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EXN22_15625 (ligD)
DNA repair and recombination proteins [BR:
ptk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EXN22_15625 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
mRNA_cap_enzyme
Tudor_3
Motif
Other DBs
NCBI-ProteinID:
QBF27051
UniProt:
A0A411MJT9
LinkDB
All DBs
Position
3492902..3495340
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AA seq
812 aa
AA seq
DB search
MAKPLQEYARKRNFDATPEPVGAGLTRNEPHALQYCIQKHDASHLHYDFRLELDGTLKSW
AIPKGPSLDPKIRRLAVHVEDHPLDYANFEGHIPEGHYGAGDVIVWDRGVWIPEDDPHKA
YAKGKLRFRLQGEKLSGIWNLFRTHLAGKQEQWLLIKSADAQARPEASYDILQAQPHSVL
SDRTLVTRTPRPTNRSRASKAALPDVLKPQLATLVETPPEGDWRYEVKFDGYRILTRIEG
EDVRLFTRNGHDWTAKLPSQARALAKLGLHSAWLDGEMVVANEHGVADFQALQNAFDQQR
DEQIIYYLFDLPYLNGKDLRQCPLEQRRSALAALLEKADAKRLRFSADFDQPVESLLDSA
CKLAMEGLIGKRLGSRYISRRSGDWIKLKCKQRQEFVIVGFTEPKGSRKSFGALLLALHD
ERGELRYAGKVGSGFTRTTLAHIHHRLAPLEISKPRFKNPPTGVEAKGVHWLKPRLLAEI
AYAQMTRDGVVRHSVFHGLRDDKPAKAIGLEQPVKSPTGKTSTLHLTHPQRIVDASSGIS
KGQVAEYYAQVARWILPHLKRRPVALVRAPDGLAGELFFQKNAAQLNIPGLEHHDKAEAG
QVLMIIDQAETLLGAVQMNTLELHTWNATAKDFDKPDRLILDLDPDPALPWKAMLEATQL
TLALLDELGLQSFLKTSGGKGMHIVVPLSRRAGWDEVKGFAKAMVQHLAGLFPERLSAVS
GPKNRVGRIFIDYLRNGKGATTVCAYSIRAREGLPVSVPIRREELTELKGANQWNLLNLG
PRLAEGDDPWAGYGLVRQSISKELRRRMGVQS
NT seq
2439 nt
NT seq
+upstream
nt +downstream
nt
atggccaagccgttgcaagagtacgcgcgcaagcgcaatttcgatgccacccctgagccg
gtgggcgcgggcttgacccgcaatgagccacacgcgctgcagtactgcatccagaagcac
gacgccagccacctgcactacgactttcgcctggagctggacggcaccctgaaaagctgg
gcgatccccaagggcccatcgctggatccaaagatcaggcgcctggctgtgcacgtcgaa
gaccatcccctggactacgccaacttcgagggccatattcccgaaggtcattatggcgcc
ggggatgtgatcgtctgggaccgtggcgtgtggattcccgaagacgatccgcacaaagcc
tatgccaagggcaagctgcgctttcgtttgcaaggcgagaaactttcgggaatctggaac
ctgtttcgcacccacctggcgggcaagcaggagcagtggctgctgatcaagtccgccgac
gcccaggcgcgcccagaggccagctacgatatcctccaggcccagccgcacagtgtgctc
agcgaccgtaccctggtcacccgtacaccccggccgacgaatagatcccgcgccagcaag
gctgccctgcccgacgtgctcaagccgcaactggccaccctggtagagacaccgcccgag
ggcgactggcgctacgaagtgaaattcgacggttaccgcatcctcacccgcattgaaggt
gaagatgtccgcctgttcacccgcaatggccatgactggactgccaaactgcccagccag
gcccgggccttggccaagctcggcctgcactcggcctggctagatggcgagatggtggta
gccaacgagcacggcgtggcggacttccaggccctgcaaaatgccttcgaccagcaacgc
gacgagcagatcatctactacctgttcgacctgccctacctcaacggcaaggacctgcgc
cagtgcccactggaacagcgccgcagtgccctggcggcactgctggagaaagccgatgca
aaacgcctgcgcttctctgccgattttgaccagcccgtcgagtcgctgctcgacagcgct
tgcaagctggcgatggaaggcctgatcggcaagcgcctgggcagccgctacatcagccgg
cgcagcggcgactggatcaagctcaagtgcaagcagcgccaggagttcgtcatcgttggt
tttaccgaacccaagggctcacgcaagtccttcggcgcgctgctattggccctgcatgat
gagcgcggtgagctgcgctatgccggcaaggtgggtagcggtttcacccgcaccacactg
gcgcatattcaccaccgcctggcgcctttggaaatcagtaagccgcggttcaaaaacccg
ccaaccggcgtcgaagccaaaggagtgcactggctcaagccacgactgctggccgaaatc
gcctatgcgcagatgacccgtgacggcgtcgtccgccattcagtgttccacggcctgcgc
gacgataaaccggccaaggccatcggcctggagcagcccgtgaaatccccgacaggtaaa
acctctaccctgcacctgacccacccgcaacgcatcgtcgatgccagcagcggtatcagc
aagggccaggtcgccgagtactacgcccaggtcgcccggtggatcctgccgcatcttaaa
cgccgccccgtggccctggtacgtgcccccgacggcctggctggcgaactgttcttccag
aaaaacgctgcgcaattgaacatccccggccttgaacaccacgacaaggccgaggccggc
caggtgctgatgatcatcgaccaggccgaaaccctgctgggcgccgtgcagatgaacacc
ctcgaactgcacacctggaacgccaccgccaaggacttcgacaagcccgacaggctgatc
ctcgaccttgacccggaccctgcgcttccctggaaggccatgctcgaagccacccagttg
accctggcgctgctcgacgaactgggcctgcagtcatttctcaagaccagcggcggcaag
ggcatgcacatcgtcgtaccgctaagccggcgtgccggttgggacgaggtcaagggcttt
gccaaggccatggtccagcacctggccgggttgttccccgagcgcttgtcggcggtatcc
gggccgaagaaccgggtcggtcggatcttcatcgactacctgcgcaacggcaaaggcgcg
accaccgtttgcgcctattcaatccgcgcccgcgaagggctgccggtatcggtgccgatt
cgccgcgaggaactgaccgaactcaagggcgcgaaccaatggaacctgctcaacctgggc
ccgcgcctggccgaaggcgatgatccgtgggccggctatggcctggtgcgccagtcgatc
agcaaggagctgcgccggcgcatgggtgttcaatcatga
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