Pseudomonas tructae: EXN22_19840
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Entry
EXN22_19840 CDS
T07857
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
ptk
Pseudomonas tructae
Pathway
ptk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXN22_19840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptk03019
]
EXN22_19840
03009 Ribosome biogenesis [BR:
ptk03009
]
EXN22_19840
Enzymes [BR:
ptk01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
EXN22_19840
Messenger RNA biogenesis [BR:
ptk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
EXN22_19840
Ribosome biogenesis [BR:
ptk03009
]
Prokaryotic type
rRNA processing factors
EXN22_19840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
TcdA_TcdB
Motif
Other DBs
NCBI-ProteinID:
QBF27825
UniProt:
A0A411MLX9
LinkDB
All DBs
Position
4345092..4348226
Genome browser
AA seq
1044 aa
AA seq
DB search
MLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRIEPSLEAAFVDFGSE
RHGFLPLKEISREYFKKSPEGRVNIKDVLSEGQEVIVQVEKEERGNKGAALTTFISLAGR
YLVLMPNNPRAGGISRRIEGEERNELREALNGLVAPADMGLIVRTAGLGRSSEEMQWDLD
YLLQLWTAIKEASLDRAAPFLIYQESNVIIRAIRDYLRQDIGEVLIDSIDAQEEALTFIR
QVMPQYASKIKLYEDSVPLFNRFQIESQIETAFQRVVDLPSGGSIVIDPTEALVSIDINS
ARATKGSDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVEEKVREC
LEADRARVQVGRISRFGLLEMSRQRLRPSLGESSGIVCPRCSGTGIIRDVESLSLAILRL
IEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTRARIVILPNDHLETPHFEVQ
RLRDDSPEAMSSQSSYEIAAAETEEAQPTAATRTLVRQEAAVKTAPARANAPVPSEAAAP
VAAPAQHTPEPSLFKGLVKSLVSLFAGKEEPVAAAPVVAEKPASERPQRNEERRNGRQQS
RNRNGRREEDRKPREERAERAPREERQPREAREEAPVREERAPRQPREERQPRAPREERR
SREDRPVRELREPLDAAAPTVREERPERAPREERQPREERAPREERAPREERAPREERAP
REERQPRPPREERQPRPAEQAAEVAEEELPNEELLQDDNQEGTEGERPRRRSRGQRRRSN
RRERQRDANGNLVEGSEDGSEEQPQATELGADLAAGLTVTAAVATSNISAAAEAQANQQA
ELATVTVEEQAVAEVAATETVVVEAVQPVVETPEVAEAAEAVQVVEVAVEPVIEQPFIAP
VEVPVEASIAPAIEAPVVAVPTEVLEPVAAVEPAPEVQAPVAVEPVVVAEAVEAPAPVIE
PAPAEEPAPALEAEASALTSNGRAPNDPREVRRRKREAEAAAAAAAVAAADASAAVVAEE
APAAPAEEGVEEKLETAEEHKPLV
NT seq
3135 nt
NT seq
+upstream
nt +downstream
nt
atgctgattaacgcaactcaacccgaagagttgcgtgtagctctggtggacggccaacgt
ctctacgacctggacatcgagtccggcgcgcgtgagcagaaaaaggccaacatctacaaa
ggccggattacccggatcgaacctagcctggaagccgctttcgtcgacttcggctccgaa
cgccacggctttctgccgctgaaggaaatctcccgcgaatacttcaagaagtcgcccgaa
ggccgggtgaacatcaaggacgtactcagcgaaggccaggaagtcatcgtccaggtcgag
aaagaagagcgcggcaacaagggcgcagccctgaccaccttcatcagcctggccggtcgc
tacctggtcctgatgccgaacaacccgcgtgccggtggcatttcccgtcgtatcgaaggc
gaagagcgcaacgaactgcgcgaagccctcaacggcctggtcgcccctgccgacatgggc
ctgatcgtgcgcactgccggccttggccgcagcagcgaagaaatgcaatgggacctcgac
tacctgctgcagctgtggaccgcgatcaaggaagcctccctggaccgcgccgcgccgttc
ctgatctaccaggaaagcaatgtcatcatccgcgccatccgtgactacctgcgtcaggat
atcggcgaagtactgatcgacagcatcgacgcccaggaagaagccctgaccttcatccgc
caggtcatgccgcagtacgccagcaagatcaagttgtacgaagacagcgtaccgctgttc
aaccgcttccagatcgaaagccagatcgagaccgccttccagcgtgtcgtcgacctgccg
tccggtggctcgatcgtcatcgacccgaccgaagccctggtgtccatcgacatcaactcg
gcccgcgccaccaaaggcagcgacatcgaggaaaccgccctgcagaccaacctggaagcg
gctgaggaaatcgcccgccagttgcgcctgcgtgacatcggcggcctgatcgtgatcgac
ttcatcgacatgaccccagccaagaaccagcgcgccgtggaagaaaaagtccgcgaatgc
ctggaagccgaccgcgcccgcgtacaggtcggccgcatctcgcgtttcggcctgctggag
atgtcccgtcagcgcctgcgcccatcgctgggcgaaagcagcggcatcgtctgcccgcgc
tgcagcggtaccggcatcatccgtgacgtcgaatcgctgtcgctggcgatcctgcgcctg
atcgaagaagaagccctgaaagaccgcaccgccgaagtccgcgcccaagtgccgattccg
gttgcagccttcctgctcaacgaaaagcgcaactcgatcaccaagatcgaactgcgcacc
cgggcccgtatcgtcatcctgccgaacgatcacctggaaaccccgcactttgaagtccag
cgcctgcgcgacgacagcccggaggccatgagcagccagtccagctacgaaatcgctgcc
gccgagaccgaagaggcccagccgactgccgctacccgtaccctggtgcgccaggaagcc
gcggtcaagaccgctccggcccgcgccaacgccccagtgccaagcgaagctgccgcgcca
gtcgccgcccccgctcagcacacccctgagccaagcctgttcaaaggcttggtgaagtcg
ctggtgagcctgttcgccggcaaggaagagcctgtcgcagctgcgccagtggttgccgag
aagccggccagtgaacgcccgcagcgcaacgaagagcgtcgcaacggtcgccagcagagc
cgtaaccgcaacggccgtcgcgaagaagatcgcaaaccgcgcgaagagcgtgccgaacgc
gccccacgcgaagagcgtcaaccacgcgaagctcgcgaagaagcaccggtccgtgaagag
cgcgcgccacgccagccgcgtgaagagcgtcaaccacgcgcaccacgtgaagaacgccgc
tcccgcgaggaccgcccggtccgcgaactgcgcgagcctctggacgccgccgccccgacc
gtgcgtgaagaacgccctgagcgcgctccgcgtgaagagcgtcagcctcgtgaagagcgt
gcaccacgcgaagaacgcgcaccacgtgaagagcgcgcaccgcgcgaagaacgtgcacca
cgtgaagagcgtcaaccgcgcccgccacgtgaagagcgtcagccgcgtccagccgaacag
gctgctgaggttgctgaagaggagctgccgaacgaagagctgctgcaagatgacaaccag
gaaggcaccgaaggcgaacgccctcgccgtcgctcccgcggccagcgtcgtcgcagcaac
cgtcgtgagcgtcaacgcgatgccaacggcaacctggtagaaggctccgaagacggcagc
gaagagcagccacaagccaccgagctgggtgccgacctggccgctggcctgaccgtgacc
gccgctgttgccaccagcaacatcagcgccgctgccgaagcccaagccaaccagcaggcc
gaactcgccactgtcaccgtcgaagagcaagccgtagctgaagtcgcggcgaccgagacc
gttgtcgtggaagccgttcagccagtggttgaaacccctgaagtggccgaagcagccgag
gccgtccaggtcgttgaagtcgcggtcgaaccggttatcgagcaacccttcattgcgccg
gtcgaagtgccggtagaagccagcatcgcacctgcgatcgaagcgcctgtggttgctgtg
ccaactgaagtactggagcctgttgcggcagtggagcctgcgcctgaagttcaggcacca
gtggcggtcgagccggtggtggttgcagaagcggtagaggcacctgcaccagtcatcgag
ccagcaccggctgaagagcctgcacctgcgcttgaagcagaggccagtgcgctgaccagc
aacggtcgcgcaccgaacgatccacgtgaagtacgccgtcgcaagcgtgaagccgaagct
gccgcagccgccgctgcagtggccgccgccgacgctagcgctgctgtagtcgctgaagaa
gcgcctgctgcaccggccgaagaaggggtcgaggaaaaactggaaaccgcagaagagcat
aaaccgctcgtctga
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