Pseudomonas tructae: EXN22_19995
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Entry
EXN22_19995 CDS
T07857
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptk
Pseudomonas tructae
Pathway
ptk03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptk00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
EXN22_19995
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptk03019
]
EXN22_19995
03009 Ribosome biogenesis [BR:
ptk03009
]
EXN22_19995
Enzymes [BR:
ptk01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
EXN22_19995
Messenger RNA biogenesis [BR:
ptk03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
EXN22_19995
Ribosome biogenesis [BR:
ptk03009
]
Prokaryotic type
rRNA helicases
EXN22_19995
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
Motif
Other DBs
NCBI-ProteinID:
QBF27850
UniProt:
A0A411MME8
LinkDB
All DBs
Position
complement(4372432..4374093)
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AA seq
553 aa
AA seq
DB search
MTQETGGFAALDLHPSIVAAVLATGYEEPSAIQQQSIPIILAGHDMIGQAQTGTGKTAAF
ALPILNRIDPSKREPQALILAPTRELALQVATAFETYAKQMPGVTVVAVYGGAPMGPQLK
AIRNGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEMLKLGFMDDLEVIFKAMPET
RQTVLFSATLPASIRAIAERHLRDPKHVKIQTKTQTVTAIEQAHLMVHADQKVSAVLRLL
EVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDIAQNQRERVIDSLKDGRLDIVV
ATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAGREGRALLLVTPRERRMLQVI
ERVTGQKVAEVRLPNAQAVLDARIKKLTNSLAPLVADAESTHGDLLDRLTADIGCSPRAL
AAALLRKATNGQALTLDAVEKEQPLVPNSAPRERTGDRPDRGERERRAPMPLGEGRARCR
TALGARDGIAAKNLLGAILNEGGLAREAIGRIQVRDSFSLVELPEEGLERLLTKLKDTRV
AGKQLKLRRYRED
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgacccaggaaaccggcggcttcgccgctctcgatcttcatccgagcattgttgctgca
gtgttggctaccggctacgaagagccgtccgccattcagcagcaatcgatcccgattatt
ctcgctggtcacgacatgatcggtcaggcgcagacaggtaccggtaaaaccgctgctttc
gccctgccaatcctgaaccgtatcgacccgagcaagcgcgagccgcaagccctgatcctg
gcgccaacccgtgagttggcgctgcaagtagccaccgcttttgaaacctacgccaagcag
atgccgggcgtaaccgtggtggccgtatacggtggtgccccgatgggcccacaactcaaa
gctatccgtaacggcgcgcaaatcgtcgttgcaaccccgggccgtctgtgcgaccacctg
cgtcgcgacgagaaggtcctggcaaccgtcaaccatctggtgctcgacgaagctgacgaa
atgctcaagctgggcttcatggacgacctcgaagtgatcttcaaggccatgccggaaacc
cgccagaccgtactgttctcggcgactctgcctgcttcgatccgcgcaattgccgagcgt
cacctgcgtgatccgaagcacgtcaagatccagaccaagactcagactgtcactgcgatc
gagcaagctcacctcatggtccatgccgaccagaaggtctccgctgtcctgcgtctgctg
gaagtggaagagttcgacgcgctgatcgccttcgtacgtaccaagcaagccaccctggac
ctggccagcgctctggaagccaaaggctacaaagccgctgcgctgaacggtgacattgcc
cagaaccagcgtgagcgcgttatcgactcgctcaaggatggccgcctggacatcgtcgtc
gctaccgacgtcgctgcccgtggtctggacgtaccgcgcatcactcacgtgttcaacgtc
gacatgccgtacgacccggagtcctacgttcaccgtatcggccgtaccggccgtgccggt
cgcgaaggccgtgcgctgctgctggtaacgccacgtgagcgtcgcatgctgcaggtgatc
gagcgtgttaccggccagaaagttgccgaggttcgcctgccgaacgcccaggcggttctg
gatgcacgcatcaagaaactgaccaacagcctggcgccgctggttgctgacgctgagtcg
acccacggtgacttgctggatcgtctgactgccgacatcggttgcagtccgcgcgccctg
gccgctgccctgctgcgcaaggctaccaacggtcaggccctgaccctggacgctgtggag
aaagagcagccgctggttccgaactccgccccgcgtgagcgcactggtgatcgtccagac
cgtggcgagcgtgagcgtcgtgcaccgatgccgttgggcgaaggtcgtgctcgctgccgt
accgcgctgggcgcgcgtgacggtatcgccgccaagaacctgctgggcgccatcctcaac
gaaggcggcctggcccgcgaagcgatcggtcgcatccaggtgcgcgacagcttcagcctg
gtcgagctgccggaagaaggcctggagcgtctgctgaccaagctcaaggacactcgtgtt
gccggcaagcagctgaagctgcgccgctaccgcgaagactga
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