Pseudomonas tructae: EXN22_24440
Help
Entry
EXN22_24440 CDS
T07857
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
ptk
Pseudomonas tructae
Brite
KEGG Orthology (KO) [BR:
ptk00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
ptk03016
]
EXN22_24440
Enzymes [BR:
ptk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
EXN22_24440
Transfer RNA biogenesis [BR:
ptk03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
EXN22_24440
Prokaryotic type
tRNA splicing ligases
EXN22_24440
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
CHDCT2
Motif
Other DBs
NCBI-ProteinID:
QBF28680
UniProt:
A0A411MPS8
LinkDB
All DBs
Position
complement(5332991..5334196)
Genome browser
AA seq
401 aa
AA seq
DB search
MNILEVAGGKPIKLWTDGVPVDDGAREQLLNTAKMPFIFKHLAVMPDVHLGKGSTIGSVI
PTLGAIIPAAVGVDIGCGMIAARTSLSASDLPDNLHGLRLAIEKAVPHGKTFGRRDQGAW
DSVPTLADHAWSDLAVRFKAITDKYPKLEKTNNRQHLGTLGGGNHFIEVCLDEANRVWFM
LHSGSRGVGNAIGNLFIELAQADMRQHIANLPDRNLAYFEEGSRHFADYVEAVEWAQDFA
RQNRALMMHAVIAATRKVLGKPFEANLEAVNCHHNYVQREHHFGHDVLVTRKGAVSAQKG
ELGIIPGSMGAKSFIVRGLGNEEAFCSCSHGAGRVMSRTRAKQAFTIEDQQRATAHVECR
KDKDVIDEIPMAYKDIDAVMQAQRELVEVVHTLRQVVCVKG
NT seq
1206 nt
NT seq
+upstream
nt +downstream
nt
atgaacatactcgaagtggccggcggcaagccgatcaagctctggaccgacggcgtcccg
gtggatgacggcgcccgcgaacaactgctgaacacggcgaagatgccgttcatcttcaag
cacctggcggtgatgcccgatgtgcacctgggcaagggctcgaccatcggcagcgtgatc
ccgaccctgggtgcgatcatcccggcggcagtgggtgtcgatatcggctgcggcatgatt
gccgcgcgtacctcgctgagcgccagcgacctgccggataatctgcacggtctgcgtttg
gcgatcgaaaaggccgtgccccacggcaagaccttcggccgccgcgaccagggcgcctgg
gacagcgtgccgaccctggccgaccatgcctggagcgatctggcagtgcgcttcaaggca
atcaccgacaaataccccaagcttgagaaaaccaataaccgccagcacctgggcaccctt
ggcggcggcaaccatttcatcgaggtctgcctggatgaagccaaccgtgtctggttcatg
ttgcacagtggctcgcgcggggttggcaacgccatcggcaatctgttcattgaactggcc
caggccgacatgcgtcagcacatcgccaacctgccggaccgcaatctggcgtatttcgaa
gaaggcagccggcactttgccgactacgtcgaagcggtggagtgggcccaggacttcgcc
cgacagaaccgtgcgttgatgatgcacgcggtgattgccgcaacgcgcaaggtgctcggc
aaacctttcgaggccaacctcgaagcggtcaactgccatcacaactatgtgcagcgcgag
catcactttggccacgacgtgctggtcacccgcaagggcgcggtgtcggcgcaaaagggc
gaattggggatcattcccggctccatgggggcgaagagttttatcgttcgcggcctgggc
aacgaagaggcgttctgctcctgcagccatggcgccggacgggtgatgagccgcacccgg
gccaagcaggcgttcaccatcgaggatcagcagcgcgccaccgcccatgtcgaatgccgc
aaggacaaggacgtgatcgacgagatccccatggcctacaaggacatcgacgcggtgatg
caagcccagcgcgagctggtggaagtggtgcacaccctgcgtcaggtggtgtgcgtaaag
ggatag
DBGET
integrated database retrieval system
