KEGG   Purpureocillium takamizusanense: JDV02_001246
Entry
JDV02_001246      CDS       T08929                                 
Symbol
LSM2
Name
(RefSeq) U6 snRNA-associated Sm-like protein LSm2
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
ptkz  Purpureocillium takamizusanense
Pathway
ptkz03018  RNA degradation
ptkz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptkz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    JDV02_001246 (LSM2)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JDV02_001246 (LSM2)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptkz03019]
    JDV02_001246 (LSM2)
   03041 Spliceosome [BR:ptkz03041]
    JDV02_001246 (LSM2)
Messenger RNA biogenesis [BR:ptkz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     JDV02_001246 (LSM2)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     JDV02_001246 (LSM2)
Spliceosome [BR:ptkz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    JDV02_001246 (LSM2)
 Complex C
  U2 snRNP components
    JDV02_001246 (LSM2)
SSDB
Motif
Pfam: LSM Hfq AEP1 SM-ATX DUF150_C
Other DBs
NCBI-GeneID: 72063209
NCBI-ProteinID: XP_047838118
UniProt: A0A9Q8Q8E2
LinkDB
Position
1:join(4032881..4032894,4033008..4033155,4033374..4033476,4033539..4033570)
AA seq 98 aa
MLFFSFFKTLIDHEVTVELKNDIQLKGTLKSVDQYLNIKLDDISVVEELKYPHLTSVKNV
FIRGSVVRYVHLPAASVDTQLLEDATRREAAAQQAKAR
NT seq 297 nt   +upstreamnt  +downstreamnt
atgctcttcttcagcttcttcaagacgctcatcgaccacgaggtcaccgtcgagctcaag
aacgacatccagctcaagggcacgctcaagagcgtggaccagtacctcaatatcaagctc
gacgacatttccgtcgtggaggagctcaagtaccctcatctcacctccgtcaagaatgtc
ttcatccgtggctccgtggtgcggtacgtgcacttgccagctgcgtcggtagacacgcag
ctgctggaggatgcgacgcggagagaagcagcagctcagcaggccaaggcgaggtga

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