Purpureocillium takamizusanense: JDV02_003866
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Entry
JDV02_003866 CDS
T08929
Symbol
RRP6
Name
(RefSeq) exosome nuclease subunit
KO
K12591
exosome complex exonuclease RRP6 [EC:3.1.13.-]
Organism
ptkz
Purpureocillium takamizusanense
Pathway
ptkz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptkz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDV02_003866 (RRP6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptkz03019
]
JDV02_003866 (RRP6)
Messenger RNA biogenesis [BR:
ptkz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Exosome cofactors
JDV02_003866 (RRP6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
PMC2NT
HRDC
Motif
Other DBs
NCBI-GeneID:
72065822
NCBI-ProteinID:
XP_047841013
UniProt:
A0A9Q8QE10
LinkDB
All DBs
Position
3:join(1103929..1104750,1104839..1105038,1105093..1105426,1105487..1105677,1105752..1107012)
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AA seq
935 aa
AA seq
DB search
MDGACAGGVWGCPRRTKPPAAWPAGPGPAGGCLMPAMRRGTSQRPRLREQRTRSTCVTEP
GATAKLPNWRCTSPRPRAQGILCLRRRVGSKLETPRPPGPHRRGSAHTLIDKPATLKAQI
SASPSRLASAPHRICCPQHPAPCPRDRPMDRPMETPQDFKSLQDGIQKSLVSAVKTVNRI
AAEDLGFQRAVDPDVAEQLDESTARVLALSTRLLAAAGKACGVKPPALEDVEDIDLKWQS
LVDVVDSALEKADTALDEYTGLVKRKEPPAGSDPAPGAKRAKPTTKVVRNANVSKPQLLF
EDKPDNFPTGPWKPILTSKPHAAVPLGESLVLAPNENGTPQYKHPYESEIKQMTYPDRVF
TRQDPIPPQPAESTTATWVDTYQGVLDMLEALKGAEEIAVDLEHHDFRTYTGLVCLMQIS
TREQDWIVDTLQPWRRKLEVLNEVFADPSIVKVFHGAYMDMVWLQRDLGLYVNGLFDTFF
ACDLLAYPGKSLAFLLSKFVDFDADKQYQLADWRIRPIPDEMMYYARSDTHYLLYIFDRL
RNELVATSDRRHPETDLIARALQRSRDLALSRHENPDYDEGTGLGPRGWFNFLLKQSHLG
LDGEQFAMFRALWKWRDTLARQEDESPNFVLGTNNLVGIARVNPPDLKALHSLLPVTAPL
ARPRFKEIWELMQEAKARGGPTALGFYTAGAHPQEPGGGGSAPKAAVAATQMPGPDVQVA
VRSLPQSQLFGSMPISTLWESRRAPQQDEGHVPFPWQRFVQDAPDEAVVEAAAAAVPIEA
ATAAADAMDEDVDQEEFTLKKGRKRKSAAVDDEAEQPAAPAEEADVVISIEDEEAPGSRK
KSHATRRAEREARKAQRRQERQQREQGGGPAQADEEPFDYSQARSVLHAKQDGASTPSRE
PKKVFDPYAKTGDDALKGARRAPPVRGERSATFKK
NT seq
2808 nt
NT seq
+upstream
nt +downstream
nt
atggacggcgcatgtgccggaggcgtctggggctgcccgcgccggaccaaaccgcccgcc
gcctggcctgccggccctgggcccgctgggggatgcctgatgcccgccatgcgccggggc
accagccaacggcctcgcttgcgcgaacaacgcactcggagcacttgtgtgactgagccc
ggggcgacagccaagctgccaaattggcgttgcacgagtcccaggccccgagctcagggt
atactgtgcctgcgcagacgggtcggttccaaactggaaacgccacggccacccgggccc
caccggcgcggcagcgctcacactcttatcgataagcccgcgacgctcaaagcccaaatt
tctgcctccccgtctcgcctcgcatcggcgccgcatcgaatctgctgcccacaacacccg
gcgccctgccctcgcgaccgcccgatggaccgcccgatggagacaccacaggacttcaag
tccctgcaggacggcatccaaaagtccctcgtgtccgccgtcaagacggtcaaccgcatc
gccgccgaggacctgggcttccagcgcgccgtcgacccagacgtcgccgagcagctcgac
gagagcaccgcccgcgtcctcgccctgtccacgcgcctgctcgcggccgccggcaaggcg
tgcggcgtcaagccccccgccctcgaggatgtcgaggacattgacctgaagtggcagtcc
ctggtcgacgtcgtcgactcggccctggaaaaggccgacacggccctcgacgagtacacc
ggcctggtcaagcgaaaggagccgcccgccggctccgacccggctccgggcgcaaagagg
gccaagccgaccaccaaggtcgtccgcaacgccaacgtctccaagccacagctcctcttc
gaggacaagcccgacaacttccccacgggcccctggaagcccatcctcaccagcaagcct
cacgcggcggtccccctgggcgagagcctggtgctcgccccgaacgaaaacggcacgccc
cagtacaagcacccgtacgagtccgagattaagcaaatgacgtatcccgaccgcgtgttc
acgaggcaggaccccatcccgccccagcccgccgagtcgacgacggcgacgtgggtcgac
acgtaccaaggcgtcctggacatgctggaggcgctcaagggggcagaggagattgccgtc
gacctggagcaccacgacttccgcacgtacaccggactggtctgcctgatgcaaatcagc
acccgggagcaggactggatcgtcgacacgctgcagccgtggcgccgcaagctcgaggtc
ctgaacgaggtctttgccgaccccagcatcgtcaaggtcttccacggcgcctacatggac
atggtctggctgcagcgcgatctcggcctctacgtcaacggcctgtttgacacctttttc
gcgtgcgacctgcttgcgtaccccggcaagagcctggcgtttctgctgtccaagtttgtc
gactttgacgccgacaagcagtaccagctcgccgactggcgaatacggccgatccccgac
gaaatgatgtactacgctcggtccgacacgcactacctcttgtacatattcgaccggctg
cgaaacgagctcgtcgccacgtccgaccgcaggcaccccgagacggacctcatcgccagg
gcgctgcagcgctcccgcgacctggccctgtcgcggcacgagaaccccgactacgacgag
ggcaccgggctcgggccccggggctggttcaacttcttgctcaagcaatcgcacctcggc
ctcgacggcgagcagtttgccatgttccgcgccctgtggaagtggcgggacacgctggcg
cgccaggaggacgagagccccaacttcgtgctgggcaccaacaacctcgtcggcatcgcc
cgcgtcaacccgccggacctcaaggccctgcacagcctgctcccggtcacggcgccgctg
gcgaggccccggttcaaggagatttgggagctgatgcaggaggccaaggccaggggcggc
cccacggccctcggcttctacacggcgggcgcgcatccgcaggagcccggcggcggcggc
tccgctcccaaggcggccgtcgcggcgacccagatgcccggcccggacgtgcaggtggcc
gttcggagcctgccgcagtcgcagctgtttgggagcatgcccatcagcaccctgtgggag
agcaggcgtgcgccgcagcaagacgagggccacgtcccgtttccgtggcagcgcttcgtg
caggacgcaccagacgaagccgtcgtggaggctgcagccgccgccgtcccgatagaggcc
gcgacggccgccgcggacgccatggacgaggacgttgaccaagaagagttcacgctcaaa
aaggggaggaagcgcaagtcggcggccgtcgacgacgaggcggagcagccggcggcgccc
gcggaggaagcggacgtcgtcatcagcatcgaagacgaggaggcgcccgggtctcgcaag
aaatcgcacgccacgagacgggcggagcgcgaggcgcgaaaggcgcagaggcgacaggag
agacagcagagagagcagggcggcgggccagcgcaggccgacgaggagccctttgactac
agccaggcgcggtcggtcctgcacgcgaagcaggacggcgcaagcacgccgtcgcgcgag
cccaagaaggtgtttgacccgtacgccaagaccggggacgacgccctcaagggggcacgc
agggcaccgcccgtgcgcggcgagaggagcgccacgttcaagaagtag
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