Purpureocillium takamizusanense: JDV02_005890
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Entry
JDV02_005890 CDS
T08929
Symbol
RAT1
Name
(RefSeq) 5'-3' exoribonuclease 2
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
ptkz
Purpureocillium takamizusanense
Pathway
ptkz03008
Ribosome biogenesis in eukaryotes
ptkz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptkz00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
JDV02_005890 (RAT1)
09123 Folding, sorting and degradation
03018 RNA degradation
JDV02_005890 (RAT1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
ptkz03021
]
JDV02_005890 (RAT1)
03019 Messenger RNA biogenesis [BR:
ptkz03019
]
JDV02_005890 (RAT1)
03009 Ribosome biogenesis [BR:
ptkz03009
]
JDV02_005890 (RAT1)
03016 Transfer RNA biogenesis [BR:
ptkz03016
]
JDV02_005890 (RAT1)
Transcription machinery [BR:
ptkz03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
JDV02_005890 (RAT1)
Messenger RNA biogenesis [BR:
ptkz03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
JDV02_005890 (RAT1)
Ribosome biogenesis [BR:
ptkz03009
]
Eukaryotic type
Pre-60S particles
RNases
JDV02_005890 (RAT1)
Transfer RNA biogenesis [BR:
ptkz03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
JDV02_005890 (RAT1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
zf-CCHC_2
Motif
Other DBs
NCBI-GeneID:
72067839
NCBI-ProteinID:
XP_047843206
UniProt:
A0A9Q8QHJ3
LinkDB
All DBs
Position
5:complement(join(1020879..1021290,1021350..1023456,1023517..1023826))
Genome browser
AA seq
942 aa
AA seq
DB search
MGIPAAFRWLSNKYPKIISPVVEEQPVTMDDGTVVPVDTTRPNPNGEELDNLYLDMNGIV
HPCSHPEDRPAPKDEEEMMLEVFRYTDRVVNMVRPRKLLMIAVDGVAPRAKMNQQRSRRF
RSAQEAKEKETDKQELLKLVKQQNGGVLPPEHADTIAKKAFDTNSITPGTPFMDILAASL
RYWCQYKLNTDPAWAKLKVIISDATVPGEGEHKIMSYVRSQRASPDHDPNTRHVIYGLDA
DLIMLGLATHEPYFRVLREDVFFQDSRARTCKLCGQKGHEARNCRGEAKEKNGDFDEKDN
VPALKPFIWLHVSVLREYLAAELAVPGLPFRFDIERAIDDWVFMCCFVGNDFLPHLPALE
IREHGIDTLTAIWRDNLPSMGGYVTKDGHIDWTRAQCILDGLARQEDAIFKRRKEQEDRR
EANAKRRKVQHNGGAPPTGRHGSDGPRMGGHQDPSRGLQLHPIASFPTEPPQAITHDMIV
NRGATKDATMANKSAASILKDQLRGMQQSSEPGTQEPSSSPSSLGKRKASELEDGMKLPT
NAPTVASAPKVSGAEPVDTVRLWEDGYADRYYQQKFHKSPEDIAFRREVARAYAEGLAWV
LLYYFQGCPSWDWFYPYHYAPFAADFKDLASLDISFDQGYTSRPFEQLMSVLPAASRHAL
PEVFHSLMTDKDSEIIDFYPEDFEVDLNGKKMAWQGVALLPFIDMNRLLAAVRGKYPLLS
EADAARNGVGRDVLLFSDGNEGLYDDVLTKFYSKRQAASKLKLNPKTSDGMAGKVEKLPE
YVPHGALRYPLDRHAMPDLDYDRSVSVYYDFPQSTQTHKSMLLRGAELPAPILTRSDIEV
IQGKASRAGRSYGGARLDRANGPGGRREPIHYGPPAGATRPGHAGAGGYGRVQPDNFSHH
YPPPPGGAGFGMGLPPPPPAYHQGYRSQNRGRGPPPNSRPYR
NT seq
2829 nt
NT seq
+upstream
nt +downstream
nt
atgggcattcctgctgcgttccgatggctctccaacaaataccccaagattatatcgcct
gtggtcgaggagcagcctgtcacaatggacgatgggaccgttgttcccgttgacacaaca
cgacctaaccccaacggcgaggaactcgataacctctacctcgacatgaacggcattgtg
cacccttgctctcacccggaggacaggcctgctcctaaggacgaggaggaaatgatgctc
gaggttttcaggtatacagaccgtgtcgtcaacatggtgcgcccacggaagctgcttatg
attgctgttgacggtgtcgccccgcgcgccaagatgaatcaacagaggtcgcgccgcttt
cgctccgcccaagaagccaaggagaaggagaccgacaagcaagaactcctcaagcttgtc
aagcagcagaatggaggcgtcctgccccccgagcacgccgacactatcgcaaaaaaggcc
ttcgataccaactccatcacccccggcacgcctttcatggatatactcgccgccagcctg
cgctactggtgccagtacaaacttaacactgacccggcctgggccaagctcaaggtcatc
atatccgacgcgactgtgcctggcgagggtgagcacaagatcatgtcctacgtcagatcg
cagcgcgcctccccagaccacgatccgaatacgcgacacgtcatatacggcctggacgct
gatctcatcatgttgggcctcgccacacacgagccatattttagggttttgcgcgaagat
gtcttcttccaggacagcagggcgagaacgtgcaagctgtgcggccagaaaggccacgag
gcgcgcaactgccgtggcgaggcgaaggagaagaatggcgatttcgacgagaaagacaac
gtcccagcgcttaagccgttcatttggctccacgtctccgtgttgagagagtacctcgcc
gctgagttggctgttcccggattaccatttcgcttcgacatagagcgtgccattgacgac
tgggtgttcatgtgttgctttgttggcaatgacttcctgcctcatctccctgctttggag
attcgagagcatgggatcgacaccttgacagctatttggcgcgataaccttccgtcgatg
ggcggatacgttaccaaggacggccatatcgattggactcgcgctcaatgtatactggat
gggcttgcgagacaagaggacgccatattcaaacggcggaaagaacaagaggaccgacgt
gaggccaatgccaagcgaagaaaggtgcagcacaatggcggcgcgcccccaactgggcgc
catgggtctgacggacctcgaatgggtggccatcaagacccgtctcggggtctgcagctc
catcccatcgcatcatttccaacggagccgccgcaagctatcacgcatgatatgatcgtc
aatcgcggcgccaccaaggatgctaccatggctaacaagagcgctgcaagcattctcaaa
gaccagctgcgcggtatgcaacaatcttcggagccagggacccaggaaccatcgtcgtcg
ccgtccagtctcggcaaacgcaaggcatctgagctggaagacggtatgaagcttccaact
aacgcgccaacggtcgcctccgcacctaaggtgtcaggcgccgagccagttgacacagtc
aggttatgggaggacggatacgcggacaggtactatcagcaaaagtttcataaaagccct
gaggacattgcctttcgtcgcgaggtcgcccgcgcctatgccgaagggcttgcatgggtt
ctcctatattattttcagggctgcccatcttgggactggttttatccgtaccattacgcg
ccctttgccgcagatttcaaagatctcgccagcctggacatttctttcgaccaaggctat
acatccaggccgttcgaacagctgatgagtgtgctgcccgccgcatctcgtcatgccctg
ccggaggtgttccacagtctcatgacggacaaagacagcgaaatcatcgacttctaccca
gaggatttcgaggtcgaccttaacggcaagaagatggcttggcaaggcgtagctctctta
ccgttcatcgacatgaaccgacttctcgccgctgttcgtggcaagtacccgctgctgagc
gaggcggatgcagctcgcaatggcgtgggccgcgacgttcttctcttctcggacggcaac
gaaggcttgtatgacgatgtcttgacgaagttttactccaaacgccaagccgcgtccaag
ctcaagctcaatcccaaaacaagtgatgggatggcgggcaaggtcgagaagcttccagaa
tacgtgcctcacggggcactgcggtatcctctggacaggcatgcaatgccagatctggat
tatgaccgctctgtcagtgtgtattacgactttccacaatctacgcagacacacaagtcc
atgctcctccgtggggcggaattacccgctcctatcctcaccaggagtgacattgaagta
atccagggcaaggcgagtcgggccggaagaagttacggaggcgcccgtcttgatcgtgcg
aatggcccaggtgggcgccgtgagcccatacactatggcccaccagctggtgcgacccgc
cctggacacgcaggtgctgggggttatggacgggtccaaccagacaacttctcacatcat
tatccgccacctccaggaggagctggctttggcatgggactgccgccgccgccgccagct
tatcaccaaggctaccgatcccaaaatagaggtagaggtcctccaccgaactctaggcct
tatagataa
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