Purpureocillium takamizusanense: JDV02_005945
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Entry
JDV02_005945 CDS
T08929
Symbol
RRP42
Name
(RefSeq) Exosome complex component rrp42
KO
K12589
exosome complex component RRP42
Organism
ptkz
Purpureocillium takamizusanense
Pathway
ptkz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptkz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDV02_005945 (RRP42)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptkz03019
]
JDV02_005945 (RRP42)
Messenger RNA biogenesis [BR:
ptkz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
JDV02_005945 (RRP42)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
JDV02_005945 (RRP42)
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
72067894
NCBI-ProteinID:
XP_047843272
UniProt:
A0A9Q8VCA1
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Position
5:complement(join(1205768..1206379,1206437..1206907))
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AA seq
360 aa
AA seq
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MATQQTLLSPAELAYLHSSLALRPPIRPDGRAPTQFRPLTGETGILPGTNGSARVCFSDG
TEAIVGVKAEIEKTAGALTSEELEGGDVQRGGANGDEEKVKARGDWLEMTVEIPGQRDDD
AATVFLAEMLREALLADGEFVKKLWINRRFHWRLYLDVLLISPPLSYPLPLLSLTTHLAL
LATRLPRLKSEGDEDPMFDDDWEASTFLYPREVAVAGSRPPITLLVVAVGDNIIFDPAKE
ELAVAESALAVSVAEVRGEKGQGDMDVDSGRELRLLSMRTVDPPSRLTPPGVPNSANVAG
TGASQPKPQIKFDGRPEEGVWKAPLGGTKFAVLESIIRAVLEKGGVAHEVLDGLDGVDLA
NT seq
1083 nt
NT seq
+upstream
nt +downstream
nt
atggctactcaacagactctgctgtccccggcggagctggcctacctccacagctctctt
gccctgcgcccaccgatccgtcccgacggccgtgcgccgacacaattccgtccactcaca
ggagagacgggtatcctgcccggcaccaacggcagcgcgcgagtatgcttctcggatggc
acagaggcgattgtgggagtcaaggcggagatcgagaagacggccggcgcgttgacgagc
gaggagcttgagggaggggatgtgcagcggggcggcgccaacggcgacgaggagaaggtg
aaggcgaggggcgactggctggagatgacggtcgagatcccggggcagcgtgacgacgac
gcggcgacggtgttcctggcggagatgctgcgcgaggcactcctggcagatggcgagttt
gtcaagaaattgtggatcaacaggcgattccactggcggttatacctcgacgtcctgttg
atatcgccgccactgtcataccctctgcctctcctctcgctcaccacacacctagcactt
ctggcgaccaggctaccgcgattaaaatccgagggcgacgaggaccctatgttcgacgac
gactgggaggcgtccacgttcctgtatccccgtgaagtggccgtcgcagggtcccgcccc
cccatcacgcttctggtggtggccgtgggcgacaatatcatcttcgacccggcgaaggag
gagctcgctgttgcggagtcggccctcgccgtgtccgtggcggaggttcggggtgagaag
ggacagggcgacatggacgtcgactcaggccgcgagctacgattactgtccatgcggact
gtcgacccaccctccaggttaacgccgccaggtgtgcccaattccgcaaacgtggcgggc
accggggcgtcgcaacccaagccacagatcaagttcgacggacggcccgaggagggggtg
tggaaggcgccgctgggtggcacaaagtttgcggttttggaaagcatcatacgagcggtg
ttggaaaagggtggcgtggcacacgaggtcctggacggcttggatggcgtcgacctggca
tag
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