KEGG   Purpureocillium takamizusanense: JDV02_007945
Entry
JDV02_007945      CDS       T08929                                 
Name
(RefSeq) uncharacterized protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ptkz  Purpureocillium takamizusanense
Pathway
ptkz03018  RNA degradation
ptkz03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptkz00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    JDV02_007945
  09123 Folding, sorting and degradation
   03018 RNA degradation
    JDV02_007945
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptkz03019]
    JDV02_007945
   03041 Spliceosome [BR:ptkz03041]
    JDV02_007945
Messenger RNA biogenesis [BR:ptkz03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     JDV02_007945
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     JDV02_007945
Spliceosome [BR:ptkz03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    JDV02_007945
SSDB
Motif
Pfam: LSM SM-ATX SpoU_sub_bind
Other DBs
NCBI-GeneID: 72069893
NCBI-ProteinID: XP_047845498
LinkDB
Position
7:join(2104288..2104290,2104365..2104505,2104652..2104702,2104800..2104994)
AA seq 129 aa
MLPLGLLNAAQGHPMLVELKNGETLNGHLVQCDTWMNLTLKEVVQTSPEGDKFVRLKEAY
VKGNNIKYLRVPPEIIDKVSESQKGQQGGFRGGRGGGQSRGDHGGGRGGGDRGRGGRGGG
RGRGRGRGQ
NT seq 390 nt   +upstreamnt  +downstreamnt
atgttgcccctcggcttgctcaacgccgctcaaggccaccccatgctcgtcgagctcaag
aatggcgagaccctcaacggccacctcgtccagtgcgacacctggatgaacctcaccctc
aaggaggtggtacagacgagcccggaaggtgataagtttgtgaggttaaaggaggcctac
gtcaagggcaataacatcaagtacctacgcgtgccccccgaaatcatcgacaaggtcagc
gagtcgcaaaagggccagcagggaggattccgcggtggccggggaggtggtcagtcaaga
ggcgaccatggcggcggtcgcggcggcggcgaccgcggaaggggaggccgtggcggcggg
aggggccgcggaaggggccgtggtcaatga

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