Purpureocillium takamizusanense: JDV02_008809
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Entry
JDV02_008809 CDS
T08929
Symbol
SKI6
Name
(RefSeq) Exosome non-catalytic core component
KO
K11600
exosome complex component RRP41
Organism
ptkz
Purpureocillium takamizusanense
Pathway
ptkz03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptkz00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JDV02_008809 (SKI6)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptkz03019
]
JDV02_008809 (SKI6)
Messenger RNA biogenesis [BR:
ptkz03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
JDV02_008809 (SKI6)
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
JDV02_008809 (SKI6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
72070754
NCBI-ProteinID:
XP_047846447
UniProt:
A0A9Q8QQE8
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All DBs
Position
9:join(112183..112484,112567..113080)
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AA seq
271 aa
AA seq
DB search
MPLDTSAYSLALLRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPSEQS
QQQQQRRGGQQTQRDAASINVNVVIAGFSSVDRKKRGRNDKRIQEIEITIAKTLASAVHT
HLFPHSSITISLHVLSQDGSLLAALLNAATLAIVDAGIPMTDYIAACTAGSTSTHAAGDD
AADPLLDLNNQEEQELPFLTVATLGDGDRVAVLVCESRVQVSRLEGMLVVGIDGCKQVRK
LLDRTVKEKGVKMIREGAVQRSDAMAMDLDG
NT seq
816 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgacacgtccgcctactcgctggcgctgctgcgcgtcgacggccgccgctgg
aacgagctgcgccgcctccacgcccagatccgcacccaggatgccgccgacggctcctcg
tacctcgagatgggccacacaaaggtcatgtgcgtcgtcacggggccgtctgagcagagc
cagcagcagcagcaacgccgcggcggccagcagacccagcgcgacgccgcctccatcaac
gtcaacgtcgtcattgccggcttctccagcgtcgaccgcaagaagcgcggccgcaacgac
aagcgcatccaggaaatcgaaatcaccattgccaagacgctcgcgtctgccgtccacacc
catctcttcccccactcctctataacaatttccctccacgtcctgtcccaggacggctcc
ctcctcgccgcccttctcaacgccgccacgctcgccatcgtcgacgccggcatccccatg
accgactacatcgccgcctgcaccgctggatccacctcgacacacgccgcgggtgacgat
gccgccgaccccctgctcgacctcaataaccaggaggagcaggagctgcccttcctgact
gttgccacgcttggagatggagaccgcgttgctgtcctcgtctgcgagagcagggttcag
gtcagccgcctcgagggcatgctcgtcgttggcatcgatggctgcaagcaggtccgcaag
ttgctcgaccgcacggtcaaggagaagggtgtcaagatgattcgcgagggcgccgtccag
cgcagcgacgccatggccatggacttggacggctag
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