Purpureocillium takamizusanense: JDV02_010120
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Entry
JDV02_010120 CDS
T08929
Symbol
SUB2
Name
(RefSeq) RNA helicase
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptkz
Purpureocillium takamizusanense
Pathway
ptkz03013
Nucleocytoplasmic transport
ptkz03015
mRNA surveillance pathway
ptkz03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptkz00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
JDV02_010120 (SUB2)
09122 Translation
03013 Nucleocytoplasmic transport
JDV02_010120 (SUB2)
03015 mRNA surveillance pathway
JDV02_010120 (SUB2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptkz03019
]
JDV02_010120 (SUB2)
03041 Spliceosome [BR:
ptkz03041
]
JDV02_010120 (SUB2)
Enzymes [BR:
ptkz01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
JDV02_010120 (SUB2)
Messenger RNA biogenesis [BR:
ptkz03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
JDV02_010120 (SUB2)
Spliceosome [BR:
ptkz03041
]
Complex C
Other components
EJC/TREX
JDV02_010120 (SUB2)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
JDV02_010120 (SUB2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
DUF4844
Motif
Other DBs
NCBI-GeneID:
72072065
NCBI-ProteinID:
XP_047847849
UniProt:
A0A9Q8QRJ5
LinkDB
All DBs
Position
11:complement(join(694015..694063,694114..694371,694426..694786,694842..695252,695734..695971))
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AA seq
438 aa
AA seq
DB search
MSHEEDLIDYSDEEIGGNEAPAGGAAAGSNGKKTELAAGNDVDKKGSYVGIHSTGFRDFL
LKPELLRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPIN
GEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDVETLKNKDTCPHII
VGTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPTQKQVMMFSA
TLSDAIKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYVKLEEKEKNRKLNELLDDLQFNQ
VIIFVKSTIRATELDKLLRECNFPSIAVHSGVSQDERIKRYKEFKEFKKRICVATDVFGR
GIDIERINLAINYDLPADASSYLHRVGRAGRFGTKGLAISFVSSDQDQEVLKEIEKRFEV
ALPEFPKEGVDASTYMAS
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atgtctcacgaagaagatctcatcgactattccgacgaggaaatcggcggcaacgaggcg
cctgccggtggcgccgccgctggctccaacgggaagaaaactgagctcgccgccggcaac
gatgtcgacaagaagggcagctatgttggcatccattcgactggattccgcgacttcctt
ttgaagcccgagcttctccgcgctattggcgactgtggcttcgagcatccatcggaggtc
caacaaacctgtattccgcaggcacttctcggtggcgacatcatctgccaggccaagtcg
ggtctgggaaagacggctgtcttcgttctggccacgcttcagcaagttgagcctatcaac
ggcgaggtctctgttgtggtcatgtgccacacgcgcgagctggcctaccagattcgcgac
gaatacaaccgattcagcaagtacatgcccgacatcaagacaggcgtgttctacggtggc
actccgatcaagacagatgtggagaccttgaagaacaaggatacgtgcccccacatcatc
gtgggcaccccgggccgtctcaaggccctcgttcgcgacaaggccctccgactcggcagt
gttcgcatcttcgtccttgacgaatgcgacaaaatgcttgaccagcccgatatgcgcacc
gatgtccaggacgtcttccgcgccaccccgacgcagaagcaggttatgatgttctcggcc
accctctcggatgcgatcaagcccatctgccgcaagttcatgcagaacccgaccgagcat
tatgtcgacgaagacaccaagctcacccttcacggccttcagcagtactatgtcaagctg
gaggagaaggaaaagaaccgaaagctcaacgagcttcttgatgatcttcagttcaaccag
gtcattattttcgtcaagagcacgattcgtgctaccgagctcgacaagctcctcagggag
tgcaactttccctcgatcgctgtccactctggcgtgagccaggatgaacgtatcaagcgt
tacaaggagttcaaggagttcaagaagcgcatctgcgtcgcgactgatgtcttcggtcgt
ggtatcgatattgagcgcatcaacctggccatcaactatgatttgcctgcggatgctagc
tcgtatcttcaccgtgtcggccgtgctggccgtttcggtaccaagggcctcgccatctcc
tttgtgagctccgatcaggaccaggaggttttgaaggagattgagaagcgtttcgaggtt
gccttgcctgagttccccaaggagggcgtggatgccagcacctacatggcgtcttaa
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