Parageobacillus thermoglucosidasius DSM 2542: AOT13_04385
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Entry
AOT13_04385 CDS
T04476
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT13_04385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptl03019
]
AOT13_04385
03009 Ribosome biogenesis [BR:
ptl03009
]
AOT13_04385
Enzymes [BR:
ptl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
AOT13_04385
Messenger RNA biogenesis [BR:
ptl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOT13_04385
Ribosome biogenesis [BR:
ptl03009
]
Prokaryotic type
rRNA helicases
AOT13_04385
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
AAA_19
Helicase_RecD
Motif
Other DBs
NCBI-ProteinID:
ALF09325
UniProt:
A0AB38R1G9
A0AAN0YLL8
LinkDB
All DBs
Position
889240..890637
Genome browser
AA seq
465 aa
AA seq
DB search
MTTFYELGLSNELMKAIRRMGFEETTPIQAETIPLSLQNKDVIGQAQTGTGKTAAFGIPL
IEKVDVTNEAIQGLVVAPTRELAIQVSEELYKIGAVKRVRVLPIYGGQDIGRQIRALKKR
PHIIVGTPGRIIDHINRKTLHLENVHTVVLDEADEMLNMGFIDDIEAILSNVPEKRQTLL
FSATMPEPIRRIAERFMNEPQIVKVKAKEMTVPNIQQYYLEVQEKKKFDILTRLLDIQAP
ELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQAKRLSVLRKFKEGSIEILVATDVA
ARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKTGVAMTFVTPREIGQLHNIERTTK
RKMERMKPPTLDEALEGQQRIAVEKLIATVETENLSFYKRAAEELLEEHDSVSLVAACIK
MLTKEPDTTPVQLTEEPPLPVKREKKRANRSGSQRERSKKRRVAR
NT seq
1398 nt
NT seq
+upstream
nt +downstream
nt
ttgacaacattttacgaattaggattaagcaacgaattgatgaaggcgattcgccggatg
gggtttgaagaaacgaccccgattcaagcggaaacgattccgttaagcctgcaaaataaa
gatgtcattggacaggcgcaaaccggcactggaaaaacggctgcttttggcattccgctc
atcgaaaaagtcgatgtaacaaacgaggcgattcaaggccttgtcgtagcgccgacgcga
gagctggcgattcaagtatcggaagaactttataaaattggcgcagtcaagcgcgtccgc
gtgctgccgatttacggcgggcaagatattgggcggcaaattcgcgcgctgaaaaaacgc
ccgcatatcattgtcggaactcccgggcgaattattgatcatattaaccgtaagacgctt
cacctagaaaacgtgcataccgtcgtgctcgatgaagcggatgaaatgctgaatatgggg
tttatcgacgatattgaggcgattttaagcaatgtccctgagaagcgacaaacattgttg
ttttccgcgacgatgccggagccaatccgccgcatcgctgagcggtttatgaatgagccg
caaattgtgaaagtcaaagcgaaggaaatgacggttccaaacattcagcaatattatttg
gaagtgcaagaaaagaagaaatttgatattttgacccgtttattagacattcaggcgccg
gaattggccattgttttcggacgtacaaaacggcgcgtcgatgaattggcggaagcgctc
aatttacgcggatacgccgctgaaggaatccatggagatttgagccaagcgaaacggtta
tccgttctccgcaaatttaaagaaggctcgatcgagattttagtcgctactgacgtggcg
gcgcgcggattggatatttccggtgtgacgcatgtctataattttgatattccgcaagac
ccggaaagctatgttcaccgtatcggccgcactggccgcgctgggaaaaccggcgtggcg
atgacgttcgttacgccgcgggaaattgggcagcttcataatattgagcgcacgacgaaa
cggaagatggagcggatgaaaccgccgacgctggatgaagcgctggaagggcaacagcgt
atcgcggtggaaaagctcatcgcaacggtcgaaactgaaaatctttctttttataaacgg
gcagcggaagaattactggaagagcacgactccgtatcgcttgtcgctgcgtgcataaaa
atgctgacaaaagagccggatacgacgccagtgcaattaaccgaggagccaccgcttccg
gtaaaacgggagaaaaagcgcgcaaaccgttcaggaagccagcgggagcgttcaaaaaaa
cggcgtgtcgctcgttaa
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