Parageobacillus thermoglucosidasius DSM 2542: AOT13_08255
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Entry
AOT13_08255 CDS
T04476
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT13_08255
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptl03019
]
AOT13_08255
Messenger RNA biogenesis [BR:
ptl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOT13_08255
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B
RMMBL
Lactamase_B_2
Anti-Pycsar_Apyc1
DUF4453
Motif
Other DBs
NCBI-ProteinID:
ALF09998
UniProt:
A0AAN0YNW6
A0AB38R101
LinkDB
All DBs
Position
complement(1660300..1661967)
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AA seq
555 aa
AA seq
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MKFLNDHQVGVFALGGLGEIGKNTYGVQFQDEIIVIDAGIKFPEDELLGIDYVIPDYTYL
VKNAEKVKGLFITHGHEDHIGGIPYLLKQINIPIYGGKLALGLIRNKLEEHGLLRQAKLI
EIREDDVIRFRKTAVTFFRTTHSIPDSYGIVVKTPVGQIVHTGDFKFDFTPVGEPANLTK
MAEIGKEGVLCLLSDSTNSEIPHFTMSERRVGESIHDIFRKVQGRIIFATFASNIHRLQQ
VTEAAVMNNRKIAVFGRSMEAAIEIGQELGYIRCPKDTFVDANEINRLPANRVTILCTGS
QGEPMAALSRIANGTHRQIQIIPGDTVVFSSSPIPGNTVSVNRTINMLYRAGAEVIHGPL
NDIHTSGHGGQEEQKLMIRLMKPKYFMPIHGEYRMQKMHAKLAIDCGVPEENCFIMDNGE
VLGLSENDAHIVGKIPSGSVYIDGSGVGDIGNIVLRDRRILSEEGLVIVVVSINMKDFKI
AAGPDIISRGFVYMRESGDLISDAQALITKHLEKVLERKTNQWSEIKNEITDTLAPFLYE
KTKRRPMILPIIMEI
NT seq
1668 nt
NT seq
+upstream
nt +downstream
nt
atgaagtttttaaatgatcatcaagttggcgtatttgccctcggcggattgggagaaatc
gggaaaaatacatatggcgtgcaatttcaagatgaaattattgtaatcgacgccggaatt
aaattccctgaagatgagttgctcggaattgattacgtcattcccgattacacgtattta
gtcaaaaatgcggaaaaagtaaaaggattgtttattactcacgggcatgaagaccatatc
ggtggaattccatacttgctaaagcaaataaatattccaatctacggcggaaaattagcg
ttagggcttatccgcaacaagctggaggagcacgggcttcttcggcaagcgaaactgatt
gaaattcgcgaagacgatgtcatccgcttccgaaaaacagcggtgacatttttccggacg
acgcacagcattcctgacagttacggaattgttgtgaaaactcctgtaggacaaatcgtt
catacgggagatttcaaatttgacttcactcctgtcggtgagccggcaaacttaacaaaa
atggcggaaatcggcaaagaaggtgtcctttgtttgctttccgacagcacaaatagtgaa
atcccgcacttcaccatgtccgagcgccgcgtcggcgaaagcattcatgacattttccgg
aaagtgcaaggacggattatttttgcgacatttgcttccaatatccatcggctacagcaa
gtaacggaagcggctgtaatgaataaccggaaaatcgctgtatttggaagaagcatggaa
gcagccattgaaatcggacaagagctcggttacattagatgtcctaaagatacttttgtg
gatgccaatgaaatcaaccgccttcctgccaaccgcgtgacgattttatgtactggcagc
caaggcgagccgatggcggcgctgtcgcgcattgccaacggcacccaccggcaaattcaa
attatccctggcgacaccgtcgtcttttcttcatcgccgattccgggcaatacggtaagc
gttaatcggacgattaatatgctttaccgcgccggcgctgaagtcattcatggcccgctg
aacgatattcacacatccgggcatggcgggcaagaagagcagaagctgatgatccgcttg
atgaaaccgaaatattttatgccgattcacggagagtaccgcatgcaaaaaatgcacgcg
aagctcgcgatagattgcggagtgccggaggaaaattgttttatcatggataacggtgaa
gtgcttggcctcagcgaaaacgacgcccacatcgtcggcaaaatcccgtccggctctgtt
tatattgacggcagcggtgtcggcgacatcggtaacatcgtcttgcgcgaccgccgcatt
ttgtcagaggaagggcttgtcatcgtcgttgtcagcatcaatatgaaagatttcaaaatc
gcggccggcccggatattatttcgcgcgggtttgtgtatatgcgcgaatccggtgattta
atcagcgacgcacaagcgctcattacgaaacaccttgaaaaagtgctcgaacgcaaaaca
aaccagtggtcggaaataaaaaatgaaattaccgatacgcttgctccgtttttatatgaa
aaaacgaagcggagaccgatgattttaccaattattatggaaatataa
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