Parageobacillus thermoglucosidasius DSM 2542: AOT13_09375
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Entry
AOT13_09375 CDS
T04476
Name
(GenBank) Zn-dependent hydrolase
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT13_09375
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptl03019
]
AOT13_09375
Messenger RNA biogenesis [BR:
ptl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
AOT13_09375
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Mur_ligase_C
Lactamase_B_6
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
ALF10206
UniProt:
A0AB38R184
A0AAN0YPA1
LinkDB
All DBs
Position
1878594..1880258
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AA seq
554 aa
AA seq
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MRTKQVEKIRIFSLGGVGEIGKNMYVVELDDDILVIDAGVMFPEDEMLGIDKVIPDISYL
VERQDRIKAIFLTHGHEEHIGAIAYVLKKITVPVYGTKLTLGLAESILKEQGVTNAKLIE
IRSDSEIFFDKAKVTFFRTIHSIPDSVGISIHTSQGAIVYTSDFKFDQTPYGKNRADLGK
MAQIGEQGVLCLLSDSTNAERPGYTGSDTVVAQEIADVIYNAGGRVFVACYASNVTRIQQ
VLNAAKQYGRKVAVVGKTLHKVMDIAVRLGYLHLPEKVTISIHDIDRYDDKELIILTTGG
HGEPMSALARMAKQAHKQVNIKKGDTVIVAASVMPGYELIFSKTIDSLYRAGANVVYRER
KVHVSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHANLAKAVGISEERTFLIDKGDV
IEFRNGVARPGGKVPYGNILIDGLGIGDVGNIVLRDRRLLSQDGILIVVVTLSKESKKII
AGPEIISRGFVYVRESETLLDEATKIVANIVNKCLQTYVIEWSSLKSNVREALSQFLFEK
TKRKPMILPIIMEV
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
ttgagaacgaaacaagtagagaaaataaggattttttcccttgggggagtcggggaaatc
ggcaagaacatgtatgtggtcgagctggatgatgacatattggtcatcgatgccggcgtc
atgttccctgaagatgagatgcttggcattgataaagtaatccccgacattagctatctc
gtggaacgccaagaccgcattaaagccatttttttaacacacggacatgaggaacatatc
ggcgctattgcttatgtgctgaaaaaaattacggtgccagtgtacggaacgaagcttacg
ttaggattggcagaatcgattttaaaggaacaaggagttacaaacgcaaaactgatcgaa
attcgctccgactcggaaattttctttgataaggcgaaagtgacgtttttccggacgatt
cacagcattcctgattcggttggaattagcattcatacgtcccaaggcgccatcgtttat
acgagcgactttaaatttgaccagactccatacggcaaaaaccgggcggatttaggaaaa
atggcgcaaattggtgaacaaggagtgctttgcttattatccgatagcacaaacgcggaa
agaccgggatatacgggatcggatacggttgttgcccaggaaattgccgatgtgatctat
aatgcgggtggccgggtgtttgttgcttgttatgcgtcaaacgttacaagaattcaacaa
gtgttgaatgcggcaaagcagtacggacggaaagttgccgttgtgggaaaaacgctgcat
aaagtgatggatattgctgttcggctaggatatttacatcttcctgaaaaagtgactatt
tccattcatgacattgaccgctatgatgataaagaattgattattttgacgaccggcggg
catggcgagccgatgagcgcattggcccgcatggcaaaacaagcgcataagcaagtcaac
atcaaaaaaggggataccgtcatcgttgcggcatcggtgatgccaggatatgaattaatt
ttttccaaaacgattgattcgttgtatcgcgccggagcgaatgtcgtttaccgcgagaga
aaagtgcatgtttcgggacacggatgtcaggaagaattaaagttaatgcttaatttgatg
aaaccgaaatattttattcctgttcacggcgaatatcggatgcaaaaggcgcacgccaat
cttgcgaaagcggttggcatctctgaagaaagaacatttttgatcgacaaaggggatgtc
attgagtttcgcaacggtgtagctcgtcctggcggaaaagttccgtacggcaacatttta
attgacggtcttggcattggcgatgttggtaacatcgttttaagagatcggcgtctcctc
tcgcaagatgggattttaatcgttgttgtcacattaagcaaagaatcgaaaaaaattatc
gcagggccggagattatttcgcgcggttttgtctatgtaagagaatccgaaacattgctt
gatgaagcgacgaaaatcgtagcaaatatcgtgaataaatgtttgcaaacttatgtgatc
gaatggtcttcgctaaaatccaacgttcgcgaagcattgagccaatttttatttgaaaaa
acaaaacgcaaaccaatgattttgccgattattatggaagtataa
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