Parageobacillus thermoglucosidasius DSM 2542: AOT13_15805
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Entry
AOT13_15805 CDS
T04476
Name
(GenBank) ATP-dependent DNA helicase
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AOT13_15805
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptl03019
]
AOT13_15805
03400 DNA repair and recombination proteins [BR:
ptl03400
]
AOT13_15805
Enzymes [BR:
ptl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AOT13_15805
Messenger RNA biogenesis [BR:
ptl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
AOT13_15805
DNA repair and recombination proteins [BR:
ptl03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
AOT13_15805
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
RecQ_Zn_bind
Motif
Other DBs
NCBI-ProteinID:
ALF11354
UniProt:
A0AAN0YQ79
LinkDB
All DBs
Position
complement(3225568..3227067)
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AA seq
499 aa
AA seq
DB search
MVTLEQLLYEKFGYSSFRKGQREIIEDILRGYDVLAMLPTGGGKSLCYQLPAYVLKGSVL
IISPLVSLMEDQVQQLRQRGEKRVIAFNSFLETEVKRKAIERLHEFRFIYVSPEMLQSEQ
LLHALMNVRISLFVVDEAHCISQWGYDFRPDFLKLGEIRKRLGSPTCLALTATAPPEVTD
DIVHILQLQPLRRHIYSVDRPNIAIKVEKTEFVQEKVKKLFDYVKMLQGPGLIYFSSRQW
AETAARQLQGEGIERVAYYHGGMDSEQRMLVQQQFLRGQLEIVCCTSAFGMGVNKENIRF
VIHFHMPGQMEAYLQEIGRAGRDGNKSIAILLYTHGDEDMVQSLMETELPTDVQVKRLCE
SLSLYGTAPNSLELQMSECSLTDVQKRILTYFLETEGVASSPRMLTEQEAADLYEKLMKK
IESRRQWKRKKLREMIKWVFHRSCRREFIVRAFQQSLTNKPDLCCDQCGFPLDGYLRVEK
EKQDFHFHGWQTELKRIFF
NT seq
1500 nt
NT seq
+upstream
nt +downstream
nt
gtggtgacattagagcagttgctttacgaaaaattcggctattcctcttttcgaaaaggg
cagcgggaaattattgaagacattttgcgcggatatgatgtattggcgatgctgccaacc
ggtggaggaaaatcgctttgctatcagcttcccgcatatgttttaaaaggcagtgtgtta
attatttcaccgctcgtttcgctgatggaagaccaagtgcagcagcttcggcaacggggg
gaaaagagagtcatcgcttttaatagttttttagaaacggaagtaaagagaaaagcgatc
gagcggctgcatgaatttcgctttatttacgtttccccggagatgctgcagtcggaacag
ctgcttcacgcgctgatgaatgtccgcatttccttgtttgtcgtcgacgaagcacattgc
atttcccagtgggggtacgattttcgccctgattttttaaagttgggggaaatccgcaag
cgcctcggctctccgacttgtttggcgctgacagccactgcgccgccggaggtgacggac
gatattgtgcatattttgcagcttcagccgctgcgccggcacatttactctgttgacagg
cctaatatcgcgatcaaagttgaaaaaacggaatttgttcaagaaaaagttaaaaagctg
tttgattatgtcaaaatgttgcaaggcccggggctaatttatttttcaagccggcaatgg
gcagaaacagcggcgcggcagctgcaaggggagggaatcgagcgggtcgcctactatcac
ggcggaatggattccgaacagcggatgctcgtccagcagcaatttttgcgcggccaattg
gaaattgtttgctgtacgagcgcatttggcatgggagtgaataaggaaaatattcgtttt
gttattcattttcatatgcctggccaaatggaagcgtatttgcaagaaattggaagggcg
gggcgcgatggaaacaagagcattgcgattttactgtatacccatggcgatgaggacatg
gtacaatctcttatggaaacagaattgccgacagatgtgcaagtgaagcggttatgcgaa
agtttgtcattatatggcacggcaccgaatagtctggagctgcaaatgagcgaatgttcg
ttgacagacgtacagaaacggattttgacatattttttggaaacagaaggagtcgcttct
tccccccggatgctgacggaacaagaggctgcggatttgtatgaaaaactaatgaagaag
atcgaatcgcgcagacaatggaagcgaaaaaagctgagagaaatgataaaatgggttttt
caccgttcatgccggcgggagttcatcgttcgcgctttccagcaatcattgacgaataaa
ccggatttatgctgcgaccagtgcggatttccgcttgatggctacttgcgcgtggagaaa
gagaaacaggatttccattttcatggctggcaaacggaattaaagcgaattttcttttaa
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