Parageobacillus thermoglucosidasius DSM 2542: AOT13_18095
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Entry
AOT13_18095 CDS
T04476
Name
(GenBank) 5-hydroxymethyluracil DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
ptl
Parageobacillus thermoglucosidasius DSM 2542
Pathway
ptl03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
ptl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
AOT13_18095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
ptl03400
]
AOT13_18095
Enzymes [BR:
ptl01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
AOT13_18095
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
AOT13_18095
DNA repair and recombination proteins [BR:
ptl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
AOT13_18095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fapy_DNA_glyco
H2TH
zf-FPG_IleRS
NFACT_N
Motif
Other DBs
NCBI-ProteinID:
ALF11782
LinkDB
All DBs
Position
complement(3669633..3670457)
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AA seq
274 aa
AA seq
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MPELPEVETIRRTLIPLAAGKTVADVQVFWPRIIKHPANISEFIETIKGQTIRDIHRRGK
FLKFIFDEHVLISHLRMEGRYAVSKKEDAIEPHTHVIFQFTDGTELRYRDVRKFGTMHLY
PKGEEDSRLPLSQLGPEPFSEEFTANFLAKRLRKTNRTIKAALLDQTVVVGFGNIYVDEA
LFRAGIHPERAASSLTDEEAACLHREMVATLQEAVEKGGSTVRSYVNTQGEIGMFQLQLF
VYGRKGEPCKRCGNPIQKTVVAGRGTHYCAFCQH
NT seq
825 nt
NT seq
+upstream
nt +downstream
nt
atgccagaactgccggaagttgaaacgattcgccgcactctcattccgttagccgctggc
aaaaccgttgccgatgttcaagtgttctggccgagaatcataaaacatccggcaaatatt
agtgaatttatagaaacgataaaaggacaaacgattcgtgacattcatcggcggggaaaa
tttttaaaatttatttttgatgaacatgtgcttatttcccatttgcgcatggaagggcgt
tatgcggtttcgaaaaaggaagatgccatcgagccgcatacgcacgtgatttttcagttt
acagacggcaccgaacttcgctatcgtgacgtaagaaaattcgggacgatgcatctttat
ccgaaaggagaagaagattcccggcttcctttgtcacagttaggcccagaaccgttttcg
gaagagtttaccgcaaattttcttgcaaagcggctgcgaaaaacgaaccgaacgatcaaa
gcggcgctgcttgaccaaaccgttgtcgtcgggttcggcaacatttatgtcgatgaagcg
ctgttccgcgccggaatccatccggaacgcgccgcgtcatcattaacggatgaggaggcg
gcatgtttgcatcgggaaatggtggcaacattgcaagaagcggtcgaaaaaggaggaagc
acggtaaggtcatacgtcaacacgcaaggggaaatcggaatgtttcaattgcagttattc
gtgtacgggcgcaaaggagaaccgtgcaaacgctgcggcaacccgattcaaaaaacggtg
gttgccggccggggcactcattattgcgccttttgccagcattaa
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