Paramecium tetraurelia: GSPATT00001577001
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Entry
GSPATT00001577001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12621
U6 snRNA-associated Sm-like protein LSm2
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03018
RNA degradation
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00001577001
09123 Folding, sorting and degradation
03018 RNA degradation
GSPATT00001577001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00001577001
03041 Spliceosome [BR:
ptm03041
]
GSPATT00001577001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
GSPATT00001577001
mRNA degradation factors
5'-3' decay
Lsm complex
GSPATT00001577001
Spliceosome [BR:
ptm03041
]
Complex B
U4/U6.U5 tri-snRNP components
LSm proteins
GSPATT00001577001
Complex C
U2 snRNP components
GSPATT00001577001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LSM
Hfq
SSFA2_C
DUF7092
Motif
Other DBs
NCBI-GeneID:
5028555
NCBI-ProteinID:
XP_001442770
Genoscope:
GSPATT00001577001
UniProt:
A0CX56
LinkDB
All DBs
Position
undetermined
AA seq
100 aa
AA seq
DB search
MQSQFFQTYFRGLIERCVSVTIELKNGLQIQGQITYVDDNLNFNLVDPEVSDPLKQPQLM
TLRNSFIRGSTVKYVHIPQEELQEEVLISACKNEVKKQKQ
NT seq
303 nt
NT seq
+upstream
nt +downstream
nt
atgtagagttaattctttcaaacctattttagaggattaattgaacgctgcgttagtgta
acaatcgaattaaaaaatggattacaaatacagggataaatcacttatgttgatgataac
ttaaattttaacttagttgatcctgaagtgtctgatcctctcaaataaccataattaatg
actttaagaaatagtttcattcgaggatcgacagttaaatatgtacatattccataagaa
gaattgtaagaagaagtgttgatatctgcttgcaaaaatgaagtcaaaaaataaaaataa
tga
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