KEGG   Paramecium tetraurelia: GSPATT00004044001
Entry
GSPATT00004044001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12623  U6 snRNA-associated Sm-like protein LSm4
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03018  RNA degradation
ptm03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    GSPATT00004044001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSPATT00004044001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00004044001
   03041 Spliceosome [BR:ptm03041]
    GSPATT00004044001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     GSPATT00004044001
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     GSPATT00004044001
Spliceosome [BR:ptm03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    GSPATT00004044001
SSDB
Motif
Pfam: LSM CobT SM-ATX
Other DBs
NCBI-GeneID: 5046357
NCBI-ProteinID: XP_001460572
Genoscope: GSPATT00004044001
UniProt: A0ED08
LinkDB
Position
undetermined
AA seq 128 aa
MINIFPLSLLLTAKGSDVVIEVKAGDTYDGKLELLDKFMNAKLTNVKHTSKDGNSFHGIK
ELLIKGNSIKYFRLNPDAEKKAQEEAEIYEQQQQQKQQKQNEQKQQRKAQNQKSRGKSYP
QKQPQQRR
NT seq 387 nt   +upstreamnt  +downstreamnt
atgataaatatcttcccgttaagtctattattaacagccaaaggatcagatgtggtaatt
gaagttaaagctggagatacatacgatggtaaattagaattattagataaatttatgaat
gccaaattaaccaatgtcaaacacacatcaaaagatggaaattcatttcatggtatcaaa
gaattgctaattaaaggaaattcgattaagtattttagattgaatcctgatgctgagaaa
aaggcttaagaggaagctgagatatacgaatagcaataataacaaaaataataaaagcaa
aatgaataaaaataataaagaaaagctcaaaattaaaagtcacgtggaaagtcttatcct
taaaagcagcctcaatagagaagatga

DBGET integrated database retrieval system