Paramecium tetraurelia: GSPATT00004065001
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Entry
GSPATT00004065001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00004065001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
ptm03041
]
GSPATT00004065001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
GSPATT00004065001
Spliceosome [BR:
ptm03041
]
Complex C
Other components
Step II factors
GSPATT00004065001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
S1
DEAD
AAA_22
GIPC1_GH2
AAA_19
Flavi_DEAD
nSTAND_NTPase5
AAA_30
nSTAND3
ATPase
Cas3-like_C_2
OB_RRP5_4th
SRP54
AAA_16
Motif
Other DBs
NCBI-GeneID:
5046378
NCBI-ProteinID:
XP_001460593
Genoscope:
GSPATT00004065001
UniProt:
A0ED29
LinkDB
All DBs
Position
undetermined
AA seq
1111 aa
AA seq
DB search
MNQLLQLQYISLCSRVLQELENHTGIKDKVLAEYIIDLGRQSKDEKEFKQKLDAAKADFT
DQFTNSLFNIIKKMSPQEKKQVEQPPQIEVVVKEQKFPGLALPNREVVQLEDMEEQSRSR
SLSKNKKKKKDKKKKKDKNKDKDKEKEREKEKEKEKEKKDKKESSASPQRTHRDIEKGHI
YEGVVTKVQDFGVFVQIAGFKGRKEGLVHISNIREKRVTNPFDILKRNQKVFVKVISIVN
EKIALSMRDVDQNSGQEIEKKAKAMNEYDQVIKQQEQSKDNNRYGAITGVKLDLAQDACK
KKAKRIASPDLWEKTRLEYNSKLVRQIDNKAIVEDSESEGFVSDSEDLEIDMNDYEPPFL
KGQTTKAGINLSPIRVVKNPEGTLQREALHAQQLARERREMREQQQRAINEQNRDKYRED
PLAQISGNMNQMQVEIPEWKKEAMFKSSVRNRTHMSIKEWRESLPIYNFKNELLAAIKEN
RILIVIGETGSGKTTQITQYLMEAGYGRNGMKIGCTQPRRVAAMSVAKRVAEEMGVQLGD
EVGYAIRFEDCTGPNTIIKYMTDGMLLREALIDKDMSQYSVIMLDEAHERTINTDVLFGL
LKQVVAKRNDFTLIVTSATLDAEKFSSYFFNCKIFRIPGRNFPVEVFFTNEPEEDYLEAA
QLCVIQIHLEEPAGDILLFLTGQEEIDTACQVLHERMKKLGPDAPELIILPVYSALPTEL
QQKIFDPAPSGARKIVIATNIAEASITIDGIYYVVDPGFSKIKVYNPKLGMDSLIIAPIS
QASAQQRAGRAGRTGPGKCYRLYTESAFNTEMLPTSVPEIQRTNLANTILLLKAMGIHDL
LNFDFMDPPPVQTMIAAMEQLYALGALDDEGLLTKVGRKMAEFPLEPPQAKMLLTAVDLG
CVDEIITIIAMLSEPNIFYRPKDRQQLADQKKARFSQTRRRSFDFKNNFSNVWCHENYIQ
ARSMRRAQDVRKQLLQIMERYKFQITSCGKDFWKIRKAITAGYFFHVAKKDQAEGYKTLS
DNQQVYIHPSSALFNKGPLWCVYHELVMTSKEYMREVCEIEPRWLIEVAENYFKAHNQMG
QLSKTKKSEKLDPLSCKFGDANAWRLSKRKG
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgaattagttgctgcaattataatacatatcattatgctccagagtgctataagaatta
gaaaatcacacagggataaaggataaggtgttggcagaatatataatagatttaggcagg
taaagcaaagatgaaaaagaatttaaataaaaattggatgctgccaaagctgattttaca
gattaatttacgaattctttattcaatatcatcaagaagatgtcaccttaagaaaaaaag
taagtagaacagccaccataaatagaagtggtagtaaaagaacagaaatttccaggatta
gcattaccaaatcgcgaagtagtttaattagaggacatggaagaataatcgcgatcaagg
tcattatcaaaaaataagaagaagaagaaggataagaaaaagaagaaggacaaaaataag
gacaaggataaagaaaaggaaagagaaaaagaaaaagaaaaggagaaggagaaaaaagat
aagaaagaatcatctgcatcaccatagaggactcatagagatatagaaaaaggacatata
tatgagggtgtagtaacaaaggtgtaggattttggagtttttgtgtagatagcaggtttt
aaaggcagaaaggaaggtttagtccatatttccaatataagagagaaaagggtgaccaat
ccttttgatattttgaaaagaaattagaaggtgtttgttaaagtgattagtattgtgaat
gagaagattgcattgtcaatgagggatgtggattaaaatagtggttaagagatagagaag
aaagctaaggcaatgaatgaatatgatcaagtgattaaataataagagtagagtaaggac
aataatagatatggagcaataacaggagtcaaattggatttagcataggatgcttgtaaa
aagaaagctaagagaattgcatctccagatttatgggagaagactagattggaatacaat
tcaaaattggttcgttagatagacaataaagctattgtggaagattcagagtcagaaggt
tttgtttcagactctgaagatttggaaatagatatgaatgattatgaacctcctttttta
aagggataaacaacgaaggcagggataaatttatcaccaattagagttgtgaaaaatcca
gaaggaactttgtaaagagaggccttacatgcttaatagttggcaagggaaaggagagaa
atgagagaataacaataaagagcaataaatgaatagaatagagataaatacagagaggat
cctttagcttagatttcaggaaatatgaattagatgtaagtagaaattcctgagtggaag
aaagaagcaatgttcaaatcaagtgtaagaaatagaacacatatgagtattaaagaatgg
agagaatctttaccaatttataatttcaagaatgaattgttggctgccattaaagagaat
cgtattctcatagtaattggagaaacaggtagtggtaaaactacttagatcacataatat
ttaatggaggctggatatggtagaaatggaatgaagataggttgcacttaacctagaaga
gtggcagcaatgtcagtggcaaaaagagtggcagaagaaatgggagtgtaacttggagat
gaagtaggttatgcaataagatttgaagattgcacaggtcctaatacaattattaagtat
atgactgatggaatgttactaagagaagcattaatagataaagatatgagtcaatatagt
gttattatgttagatgaggcacatgagagaacaattaatactgatgtgttatttggatta
ttaaaataagttgttgctaaaagaaatgatttcacattaattgtaacatcagccactttg
gatgctgaaaagttttcttcttatttttttaattgcaagatatttagaatcccaggacgt
aactttcctgttgaagtgtttttcacaaatgaacctgaagaagactatttagaagctgcc
taattgtgtgtaatttagattcacttagaagagccagctggcgatattctattgttttta
acaggacaagaagaaatagatacagcatgctaagtgcttcatgaaagaatgaagaagtta
ggcccagatgctcctgaattgattattttaccagtttattctgctttacccacagaatta
caacagaagatttttgaccctgccccttcaggagccagaaagatagttattgctactaat
attgccgaagcctcaatcactattgatggaatttattacgtggttgatccagggttctct
aaaatcaaggtatataatccaaaattgggtatggattcattaattattgctccaatcagt
caagcatccgcataataaagagcaggtagagcaggaagaactggtccaggaaaatgctat
agattatatactgaatcagcatttaatacagaaatgttacccacttcagtacctgaaata
tagagaactaatttagcaaatacaattttattattaaaagctatgggaatacatgatctt
ttgaattttgactttatggatcccccacctgttcaaactatgattgcagctatggaataa
ttgtatgcattgggagctttggatgatgaaggattgttaacaaaagtaggtaggaagatg
gcagaattccctttggaaccacctcaagctaaaatgttattgactgcagttgatttagga
tgtgtcgatgaaatcattacaattatagcaatgttatcagaaccaaacatcttctacaga
cctaaagacagataacaattagcagattagaaaaaggccagattttcatagaccagaagg
agatcatttgactttaaaaacaattttagtaatgtgtggtgtcatgaaaattatatctaa
gcaagatccatgagaagagcctaagatgttagaaaacaattattataaattatggaaagg
tataaattccaaattacatcttgtggtaaagacttctggaaaatcagaaaagctataact
gctggttatttcttccatgttgctaagaaggatcaagcagaaggttataaaactttatct
gataatcaataagtctatatccatcctagtagtgccttgttcaacaagggacctctctgg
tgtgtatatcatgagctggtcatgacatccaaagaatatatgagggaagtttgtgaaata
gaacctaggtggttaattgaagttgctgaaaattatttcaaggctcacaatcaaatggga
taactctcaaaaacaaagaaatcagagaagctggatccattaagctgcaaatttggagac
gcaaatgcatggagactaagtaagcgtaaaggttga
DBGET
integrated database retrieval system
