Paramecium tetraurelia: GSPATT00005317001
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Entry
GSPATT00005317001 CDS
T01055
Name
(RefSeq) hypothetical protein
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
ptm
Paramecium tetraurelia
Pathway
ptm03013
Nucleocytoplasmic transport
ptm03015
mRNA surveillance pathway
ptm03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
ptm00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
GSPATT00005317001
09122 Translation
03013 Nucleocytoplasmic transport
GSPATT00005317001
03015 mRNA surveillance pathway
GSPATT00005317001
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
ptm03019
]
GSPATT00005317001
03041 Spliceosome [BR:
ptm03041
]
GSPATT00005317001
Enzymes [BR:
ptm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GSPATT00005317001
Messenger RNA biogenesis [BR:
ptm03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
GSPATT00005317001
Spliceosome [BR:
ptm03041
]
Complex C
Other components
EJC/TREX
GSPATT00005317001
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
GSPATT00005317001
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
UvrD-helicase
CMS1
Cas3-like_C_2
AAA_19
AAA_30
IL7
Motif
Other DBs
NCBI-GeneID:
5013749
NCBI-ProteinID:
XP_001427965
Genoscope:
GSPATT00005317001
UniProt:
A0BPV0
LinkDB
All DBs
Position
undetermined
AA seq
471 aa
AA seq
DB search
MSVIILILFIKDFDINSRKQRENAYLNRSFLIRILFIQIFYQKSSALMDDIPDFKEEQQP
TGKDIQIDNYNVSQFKNFGLKEELLRAVKEAGFEHPTRVQAESLTNALLGEQLICQAKAG
TGKTAVFVLTVLNTINTESNKVECLVITHTRELAQQARDEFLRLGKFMKSVKVECFYGGG
EPVSVNIQTIETVKPQIVVGTPGRLKDLICERKALKVDRLKYFILDEADTMIEDLNMRKD
IQDIFLKSPQEKQFMAFSATFTESSRTSLKRFIADNKHIYEITIKPEQLFLDKLKQYYMK
MPEALKFHYLRQILNTCKLNQCIIFVKSSEKADALVTELKKKGEESVRQLYGGNRLGPDH
QKMRQKTYEQFRNGHFRLLVATNLMGRGIDIDKVNYVINFDMPDSLETYLHRVGRAGRQE
TNGVAISFVKSEEEASDGKKQTDDEVLQQILKQYPDKLQQLPQDLSTLDKF
NT seq
1416 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtgattatattaattttattcattaaagattttgatattaattctcgaaaacag
agggaaaatgcatatttaaatagaagctttttaattaggatattatttatataaatcttt
tatcaaaagagcagcgcattaatggacgatattcctgattttaaagaagaacaatagcca
actggcaaagacatataaattgacaattacaatgtctcttaatttaaaaactttgggctt
aaagaggagctcttgagagcagttaaagaagctggatttgagcatccaacaagagtccaa
gctgagtcattgacaaatgctttgttaggggaataattgatctgctaagcaaaggctgga
actggaaagactgctgtgtttgtgctgaccgtgttaaatactataaatacagaaagtaat
aaagttgaatgcctcgtaattacacatacaagagagttggcccaataggcccgagatgaa
tttttgagattgggaaagtttatgaaaagcgtgaaagtggaatgcttctatggtggaggt
gaacctgtatctgtgaatatctaaactatcgagactgtgaagccataaatagtagttggt
actccaggacgtcttaaggatctgatttgcgagagaaaagcattgaaagtggatagattg
aagtactttatcttggatgaagccgatacaatgattgaagatttgaacatgagaaaggac
atttaggacatctttttaaagtcaccataggagaaataatttatggcatttagtgcaaca
ttcacagaatcaagtagaacatcattgaaaagatttattgctgacaataaacatatttat
gaaattactattaaaccagaataactctttttagacaaattaaagcaatattatatgaag
atgccagaagcactcaaattccattatttgagataaatcttaaacacctgcaaactaaac
taatgcataatatttgttaagagttctgagaaggctgatgctttggtcactgaactaaag
aagaagggggaagagtctgttagacaactatatggtggtaatagactaggtcctgatcat
taaaaaatgagataaaaaacctatgaataattcagaaatggtcatttccgattgttagtg
gctactaacttgatgggaagaggtattgatattgataaagtcaattatgttatcaatttt
gatatgcctgattctttggagacctatttgcatagagtaggaagagcaggaagataagag
actaatggtgttgctatctcattcgttaaatcagaagaagaagcaagtgatggaaaaaaa
taaacagatgacgaagtcttataataaatccttaaacaatatcctgataagttataataa
ttgccttaagatttgtctacattagataagttctga
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