KEGG   Paramecium tetraurelia: GSPATT00005586001
Entry
GSPATT00005586001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K03008  DNA-directed RNA polymerase II subunit RPB11
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03020  RNA polymerase
ptm03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    GSPATT00005586001
  09124 Replication and repair
   03420 Nucleotide excision repair
    GSPATT00005586001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ptm03021]
    GSPATT00005586001
   03400 DNA repair and recombination proteins [BR:ptm03400]
    GSPATT00005586001
Transcription machinery [BR:ptm03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Core subunits
     GSPATT00005586001
DNA repair and recombination proteins [BR:ptm03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      GSPATT00005586001
SSDB
Motif
Pfam: RNA_pol_L_2 RNA_pol_L
Other DBs
NCBI-GeneID: 5015522
NCBI-ProteinID: XP_001429738
Genoscope: GSPATT00005586001
UniProt: A0BUX3
LinkDB
Position
undetermined
AA seq 129 aa
MNGEDFRSKLREFHLRSKEQSSQESRVILEDEKKMNNACCVKLYLEDHTIGNLTRMNLLK
QKEVTFSGYRQIHPLQHTIEIKVQTNGSIKPYDAIQKTFQDLSDEFKNLEEEWARKVAEK
EKHQMKLEI
NT seq 390 nt   +upstreamnt  +downstreamnt
atgaacggagaagatttcagaagcaaattaagggaattccatttaagaagtaaagagtaa
agttcacaggagtctagggtaattctggaggatgaaaaaaagatgaacaatgcttgttgc
gtaaaactttatttagaagatcacactataggtaatttgactagaatgaacctattaaag
taaaaggaagtgacattttctggatatagacagattcatccactttaacatactatagaa
atcaaggttcagacaaatggatcaatcaaaccttatgatgctatataaaaaacattttaa
gatttgagtgatgaattcaaaaatttggaagaagaatgggcaagaaaagttgctgaaaaa
gagaaacattaaatgaaattagaaatatga

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