KEGG   Paramecium tetraurelia: GSPATT00006781001
Entry
GSPATT00006781001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K14962  COMPASS component SWD2
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03015  mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09122 Translation
   03015 mRNA surveillance pathway
    GSPATT00006781001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00006781001
   03036 Chromosome and associated proteins [BR:ptm03036]
    GSPATT00006781001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA processing factors
   3' end processing
    Cleavage and polyadenylation specificity factor (CPSF) complex
     GSPATT00006781001
Chromosome and associated proteins [BR:ptm03036]
 Eukaryotic type
  Histone modification proteins
   HMT complexes
    COMPASS/SET1 complex
     GSPATT00006781001
    COMPASS/SET1 complex (yeast)
     GSPATT00006781001
SSDB
Motif
Pfam: Beta-prop_WDR5 Beta-prop_THOC3 WD40 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_IFT122_1st WD40_WDHD1_1st Beta-prop_EML_2 WD40_CDC20-Fz WDR55 Beta-prop_WDR90_POC16_2nd Beta-prop_WDR3_2nd WD40_MABP1-WDR62_2nd EIF3I ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st WD40_MABP1-WDR62_1st Beta-prop_WDR36-Utp21_2nd Beta-prop_EML WD40_Gbeta Beta-prop_VPS8 Beta-prop_EIPR1 Beta-prop_TEP1_2nd Beta-prop_Aladin Beta-prop_NOL10_N Beta-prop_CAF1B_HIR1 Beta-prop_TEP1_C NBCH_WD40 Beta-prop_WDR41 Beta-prop_WDR19_1st DSE1_N TRM82_WD Beta-prop_HPS5 Beta-prop_WDR75_1st B-prop_COPA_B_2nd KNTC1_N Beta-prop_NWD2_C SUKH_6 Beta-prop_ACSF4 Cytochrom_D1 PH_PRMT_N
Other DBs
NCBI-GeneID: 5020657
NCBI-ProteinID: XP_001434872
Genoscope: GSPATT00006781001
UniProt: A0C9K8
LinkDB
Position
undetermined
AA seq 332 aa
MITDEPTVEITKEVLQGLKIQKVYKDFLKEINSIDFSQNGQYLVACDDQVVNVFDIANMK
KIRTMYNNTQEIEMVKFTKDQSHIICVTKNEPYEIWHWAFEENQILKKFSGHTKIIYQLE
IYNQIILSCSFDDTLRLWELNQQQDTCYAVLDMSSKPDNRVIGAFDYSGNSFGMAFVEKE
NGQSTNCVQLYQIRKFELGPYQVKKVSGTTITQLKFSSDNQFLLCVCSDGQILILDSYLL
NTLFDIPGNADRMNVNVCFTPDSKFLITGSNSGYLYMISIQNVNKTQTQSGQLIAKVEGH
QRKCRLVLFNPKYCCLISTCRNLVVWTPNQIL
NT seq 999 nt   +upstreamnt  +downstreamnt
atgataacagatgaaccaactgttgaaataacaaaagaagtgttgtaaggattgaagatt
tagaaagtgtacaaagactttctgaaagaaatcaattcaatagatttttcatagaatgga
taatatttggttgcttgtgatgatcaagttgtaaatgtttttgacattgccaatatgaaa
aagatcaggacaatgtacaataacacttaggagattgaaatggtgaaatttacaaaggat
tagagtcatattatttgtgtgacaaaaaatgagccatatgagatctggcattgggccttt
gaggagaatcaaatattgaagaagttttctggacacacaaaaataatttattaactagaa
atttataatcaaataattctaagttgcagttttgatgacactttacgattatgggagttg
aatcaacagtaagacacctgttatgcagtgttggacatgagttctaaacctgataataga
gtaataggggcttttgattacagtgggaattcttttggtatggcttttgtagagaaggag
aatgggcaatctacaaattgtgtctagttatattaaattagaaagtttgaattaggacct
tatcaagtcaagaaggtatctggaacaacgataactcaattaaagtttagtagtgacaat
cagtttttattgtgtgtttgttcggatggtcaaatattaattttagatagttatttatta
aatacattatttgacattccagggaatgctgacaggatgaatgtcaatgtttgtttcact
ccagattccaaattcttgattactggtagcaatagtggatacttgtatatgatatcaata
tagaatgtgaacaaaactcaaactcaaagcggctagttgattgccaaagtggagggacat
caaaggaaatgcagactcgttttgttcaatccaaaatattgttgtttgattagtacttgt
agaaatcttgttgtttggactccaaatcaaatattgtga

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