KEGG   Paramecium tetraurelia: GSPATT00008194001
Entry
GSPATT00008194001 CDS       T01055                                 
Name
(RefSeq) hypothetical protein
  KO
K12618  5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
ptm  Paramecium tetraurelia
Pathway
ptm03008  Ribosome biogenesis in eukaryotes
ptm03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ptm00001]
 09120 Genetic Information Processing
  09122 Translation
   03008 Ribosome biogenesis in eukaryotes
    GSPATT00008194001
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GSPATT00008194001
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:ptm03019]
    GSPATT00008194001
   03009 Ribosome biogenesis [BR:ptm03009]
    GSPATT00008194001
   03016 Transfer RNA biogenesis [BR:ptm03016]
    GSPATT00008194001
   03036 Chromosome and associated proteins [BR:ptm03036]
    GSPATT00008194001
Messenger RNA biogenesis [BR:ptm03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     GSPATT00008194001
  mRNA degradation factors
   5'-3' decay
    5' exonucleases
     GSPATT00008194001
Ribosome biogenesis [BR:ptm03009]
 Eukaryotic type
  Pre-60S particles
   RNases
    GSPATT00008194001
Transfer RNA biogenesis [BR:ptm03016]
 Eukaryotic type
  tRNA degradation factors
   Rapid tRNA decay (RTD) pathway factors
    GSPATT00008194001
Chromosome and associated proteins [BR:ptm03036]
 Eukaryotic type
  Gene silencing
   piRNA pathway
    GSPATT00008194001
SSDB
Motif
Pfam: XRN_N XRN_M SH3_12
Other DBs
NCBI-GeneID: 5024828
NCBI-ProteinID: XP_001439043
Genoscope: GSPATT00008194001
UniProt: A0CLH9
LinkDB
Position
undetermined
AA seq 1199 aa
MGVPNFYSWLSKRYPMCKYPFTKHHGHQIDFLYLDMNQVIYKCATNQTILKDYMIEKSIE
SLWTSILNYIDTIINLVDPQLVIYLTFDGVAPRAKANQQRQRRFASSKGDAKIKQLLKQL
DLEQQNHTFKNNQITAGTEFMYELNEQVKFFINRKFKEDEKYANLQVIFSGSDVPGEGEH
KILEFMRGIKNQQNFNPDWTHCIYSADADLIMLGLGIHLKYVSIIREQSNMDQIKTQIAC
KRSIETVKFELINLQIVKEYLDLEYKTIQMKIPYNIDRVIDDFLLLFFLIGNDFLPRVYC
FDIKQGTVELLIDTFKSFLEQCDEYVTQDGWINWKSMSLLVQVLSKFEIKAIEKRVEELK
KQIKDTDNPEYQDYKIQWESELKILDALNIQFSNNNSVVARKLFYESKCQIDIDTEEGKK
ELDKIILKYLEGFQFVLSYYYHGVPSWEWYYSYYYSPMCFDLCVYLSKNQIEKIQFGQSK
PYDPFQQLLLILPPHNANLLPAPFRGLYDLESPLRKPFDYYPDEYEIDPFGAIWEHQFIC
KVPFMNSDLLISEYKKIDQSQLNELERERSKFGHAYLFVQTKIKGDSIQSKLPKIFKNKK
YRTEQIQLNGNIHQDAQEVLSRIKNQKVKQNELPILPSLHVLKINKTWLQNKKDKHKNQR
VLKVELASKNLDFLDKIESASDQTQTFDCYCGYPQNYYGEVALVVSKKSFLFLKNYQLKN
MQILSEFRDDILDEVKNDIYDHLKYTMQTRLENQGIFLESINAIAVVYFYKEIIRNPDRT
LGYNMLNVREEVMPLEWISDQKIVELVDYRLENQIDLINQKVIVVNNDKNQICGSIGCVE
KKINQDQYIVKILRQPILQTDNNKIKVQKFFDIGFVSEKLNIPPEIIHYILGCIKIFIGD
KKKQTDIIVQQIDIGFNAVHKGKNQLVPELLRINEAQFDSEGYEKFKQFEKAQLSETLVT
DLEEYAKRLPELIKFLKSVGKEKLRSLQQIKITDIFKDDVQAGINTILKHYTWLLMLPTS
QYTLCNVASSTYSSQTIKALEESKQSQKVQRTLFTHKFWLLNQEKFYVPPLMTEHPKIHK
LGDRVVALNNNYTNFGAYGVVVGVIDNGEIMIEVLWDKPRFGQTDLGGRCSPLRGSLVRF
LDIFNITQQWQEQLNTYSGGAKGHQVESWTYKQKVFVPSHEKPDYKKKKQHQPKQGQTQ
NT seq 3600 nt   +upstreamnt  +downstreamnt
atgggagtacccaatttctattcttggttatctaaacgatatccaatgtgcaaataccct
ttcaccaaacatcatgggcattaaatagatttcctctatcttgacatgaattaagtcatc
tataagtgcgcaaccaattaaaccattttaaaggactatatgatagaaaagagtatcgaa
tccctttggacatccatcttaaattacattgacaccataattaatttagtggatccacaa
ttagtcatttatttgacttttgatggagttgcaccaagagcaaaggctaattaataaaga
tagcgccgattcgcatcttcaaaaggggatgccaaaatcaaataattgctcaagtagttg
gatttggagtaataaaaccacacctttaaaaataattagataactgcaggtacagaattt
atgtatgaattaaatgaacaagtcaaattttttatcaatcgtaaattcaaagaagatgaa
aaatacgctaacttataagtcatcttctcaggcagtgatgttcctggagaaggtgaacac
aagatactagaattcatgagaggaatcaaaaaccaataaaatttcaacccagattggact
cattgcatttatagtgctgatgcagatctaattatgcttggattaggaatacatctcaaa
tatgtgtctatcataagagaacaaagcaatatggattaaatcaaaacctaaatagcttgc
aagagaagcattgaaactgttaaatttgagttgattaacctataaatcgttaaagaatat
ttggacttagaatacaagaccatccaaatgaagattccttacaacatagatagggtaata
gatgattttcttttactgttctttttaattggaaatgacttcttaccacgtgtctattgc
ttcgatattaagtagggtactgtggaattgttaatcgatacctttaaatcattcctagaa
caatgtgatgaatacgtgactcaagatggatggataaattggaaatcaatgtcattatta
gtttaagtgctgtctaaatttgaaatcaaggccattgaaaaaagagtcgaagaattgaaa
aaataaatcaaggatactgataatccagaatactaagattataaaattcaatgggaaagt
gaattgaagatcctcgatgccttaaacatccaattttctaataataactcagttgtggct
aggaaattgttttatgaaagcaaatgctaaatcgatatagacactgaagaaggtaagaaa
gaattagataagataattctaaaatatttggaaggattttaatttgttttgagttattat
tatcatggagtgccttcttgggaatggtattatagctattattattcaccaatgtgtttc
gatttatgtgtatatttgagtaagaattaaatagaaaaaatataatttggataaagcaaa
ccttatgatccatttcagtaattgctccttatcttacctcctcacaatgctaatttactg
cctgctccttttagaggactttatgatttggaatccccattaaggaaaccatttgattat
taccctgatgaatacgagatagatccatttggagcaatatgggaacatcaatttatatgc
aaggttccatttatgaattctgatttgttgatttcagaatataagaaaatagatcaaagt
caattgaatgaattagagagagaaagaagcaaatttggtcatgcatatctgtttgtccaa
actaaaatcaaaggagattccatttaatctaaattaccaaaaatatttaagaacaaaaag
tatagaacagaataaatttaattaaatggaaatatacattaggatgcttaagaagtctta
tcaagaattaaaaattaaaaggttaaacagaatgaattacctattctaccttctttacat
gttctaaagattaataaaacatggttataaaataaaaaagataaacacaaaaatcaaaga
gtattaaaggttgagttggcttcaaagaatttagatttcttagataagattgaaagtgcc
agtgatcaaacttaaacattcgattgttattgcggatatccataaaattattatggagaa
gtggctttggtagttagtaagaaatcatttttgttccttaaaaactattagcttaaaaat
atgcaaatactgtctgaattcagagatgacattttagatgaagtcaaaaatgacatttat
gatcatttgaaatatacaatgtaaactagattagagaattaggggatatttttagagtca
attaatgccattgcagttgtttatttttataaggagatcataagaaatccagatagaaca
ttaggttataatatgttgaacgttagagaggaagtgatgccattagaatggatttcagat
cagaagattgttgaattggtggattacagattagagaatcaaattgatttaataaattaa
aaagtcattgtagttaataatgataagaattaaatctgtgggtcgattggctgtgttgaa
aagaagattaattaagattagtatatcgtcaagattcttagataaccaattttacaaaca
gacaataataaaatcaaagtgtaaaagtttttcgatattggatttgtgtctgaaaaatta
aatatacctccagaaataattcattatattttaggatgcattaaaatcttcattggggat
aagaaaaagtaaactgacattatagtttaataaattgatattggttttaatgcagtacac
aaaggtaaaaactaattagtacctgaattactgagaataaatgaagctcaatttgattca
gaaggatatgaaaaattcaaacagttcgaaaaagcttagctttccgaaaccttagtaaca
gatttggaagagtatgctaaaaggttgccagaattgattaagtttctaaaatctgttggt
aaagagaagttaaggtctctacagtagattaaaattacagacattttcaaagatgatgtt
caagccggtattaatactattttgaagcattacacttggcttcttatgctcccaacttca
caatatactttatgtaatgttgcgtcatcaacatattcgagtcaaaccattaaagcttta
gaggaatcaaagtagtcctaaaaggttcagaggactttgtttactcataaattttggtta
ttaaatcaagaaaagttttatgttcccccactgatgactgaacatcccaaaatccataaa
ttaggggatagagtagtagcattaaataataattatacaaatttcggtgcttatggagtt
gtagttggcgtaatagataatggagaaataatgattgaagttctatgggataaacctcgt
tttggataaacagatttaggaggaagatgctctcctttgagaggatcattggttcgcttt
ttagatatttttaacattacacaataatggcaagaataattaaacacatatagtggaggt
gccaaaggtcattaagttgagagttggacttataagtaaaaagtatttgtaccttctcat
gaaaaacctgattataaaaaaaagaaataacatcaaccaaaataagggtagacctaatga

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